Search Results - "Vasquez, Paula"

A biophysical basis for mucus solids concentration as a candidate biomarker for airways disease by Hill, David B, Vasquez, Paula A, Mellnik, John, McKinley, Scott A, Vose, Aaron, Mu, Frank, Henderson, Ashley G, Donaldson, Scott H, Alexis, Neil E, Boucher, Richard C, Forest, M Gregory

“…In human airways diseases, including cystic fibrosis (CF) and chronic obstructive pulmonary disease (COPD), host defense is compromised and airways…”
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Enrichment of dynamic chromosomal crosslinks drive phase separation of the nucleolus by Hult, Caitlin, Adalsteinsson, David, Vasquez, Paula A, Lawrimore, Josh, Bennett, Maggie, York, Alyssa, Cook, Diana, Yeh, Elaine, Forest, Mark Gregory, Bloom, Kerry

“…Regions of highly repetitive DNA, such as those found in the nucleolus, show a self-organization that is marked by spatial segregation and frequent…”
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Modeling and Simulation of Mucus Flow in Human Bronchial Epithelial Cell Cultures - Part I: Idealized Axisymmetric Swirling Flow by Vasquez, Paula A, Jin, Yuan, Palmer, Erik, Hill, David, Forest, M Gregory

“…A multi-mode nonlinear constitutive model for mucus is constructed directly from micro- and macro-rheology experimental data on cell culture mucus, and a…”
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Macro–Micro-Coupled Simulations of Dilute Viscoelastic Fluids by Cromer, Michael, Vasquez, Paula A.

“…Modeling the flow of polymer solutions requires knowledge at various length and time scales. The macroscopic behavior is described by the overall velocity,…”
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Stable, fertile lines produced by hybridization between allotetraploids Brassica juncea (AABB) and Brassica carinata (BBCC) have merged the A and C genomes by Katche, Elvis, Gaebelein, Roman, Idris, Zurianti, Vasquez‐Teuber, Paula, Lo, Yu‐tzu, Nugent, David, Batley, Jacqueline, Mason, Annaliese S.

“…Summary Many flowering plant taxa contain allopolyploids that share one or more genomes in common. In the Brassica genus, crop species Brassica juncea and…”
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Baseline Goblet Cell Mucin Secretion in the Airways Exceeds Stimulated Secretion over Extended Time Periods, and Is Sensitive to Shear Stress and Intracellular Mucin Stores by Zhu, Yunxiang, Abdullah, Lubna H, Doyle, Sean P, Nguyen, Kristine, Ribeiro, Carla M P, Vasquez, Paula A, Forest, M Gregory, Lethem, Michael I, Dickey, Burton F, Davis, C William

“…Airway mucin secretion studies have focused on goblet cell responses to exogenous agonists almost to the exclusion of baseline mucin secretion (BLMS). In human…”
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Erlang-Distributed SEIR Epidemic Models with Cross-Diffusion by Chebotaeva, Victoria, Vasquez, Paula A.

“…We explore the effects of cross-diffusion dynamics in epidemiological models. Using reaction–diffusion models of infectious disease, we explicitly consider…”
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The power of weak, transient interactions across biology: A paradigm of emergent behavior by Vasquez, Paula A., Walker, Ben, Bloom, Kerry, Kolbin, Daniel, Caughman, Neall, Freeman, Ronit, Lysy, Martin, Hult, Caitlin, Newhall, Katherine A., Papanikolas, Micah, Edelmaier, Christopher, Forest, M. Gregory

“…A growing list of diverse biological systems and their equally diverse functionalities provides realizations of a paradigm of emergent behavior. In each of…”
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Centromere Tethering Confines Chromosome Domains by Verdaasdonk, Jolien Suzanne, Vasquez, Paula Andrea, Barry, Raymond Mario, Barry, Timothy, Goodwin, Scott, Forest, M. Gregory, Bloom, Kerry

“…The organization of chromosomes into territories plays an important role in a wide range of cellular processes, including gene expression, transcription, and…”
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Entropy gives rise to topologically associating domains by Vasquez, Paula A, Hult, Caitlin, Adalsteinsson, David, Lawrimore, Josh, Forest, Mark G, Bloom, Kerry

“…We investigate chromosome organization within the nucleus using polymer models whose formulation is closely guided by experiments in live yeast cells. We…”
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Dephosphorylation of the MAP kinases MPK6 and MPK3 fine-tunes responses to wounding and herbivory in Arabidopsis by Hann, Claire T, Ramage, Sophia F, Negi, Harshita, Bequette, Carlton J, Vasquez, Paula A, Stratmann, Johannes W

“…The Arabidopsis MAP Kinases (MAPKs) MPK6 and MPK3 and orthologs in other plants function as major stress signaling hubs. MAPKs are activated by phosphorylation…”
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Microtubule dynamics drive enhanced chromatin motion and mobilize telomeres in response to DNA damage by Lawrimore, Josh, Barry, Timothy M, Barry, Raymond M, York, Alyssa C, Friedman, Brandon, Cook, Diana M, Akialis, Kristen, Tyler, Jolien, Vasquez, Paula, Yeh, Elaine, Bloom, Kerry

“…Chromatin exhibits increased mobility on DNA damage, but the biophysical basis for this behavior remains unknown. To explore the mechanisms that drive DNA…”
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High‐throughput genotyping for species identification and diversity assessment in germplasm collections by Mason, Annaliese S., Zhang, Jing, Tollenaere, Reece, Vasquez Teuber, Paula, Dalton-Morgan, Jessica, Hu, Liyong, Yan, Guijun, Edwards, David, Redden, Robert, Batley, Jacqueline

“…Germplasm collections provide an extremely valuable resource for breeders and researchers. However, misclassification of accessions by species often hinders…”
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Model Comparison and Assessment for Single Particle Tracking in Biological Fluids by Lysy, Martin, Pillai, Natesh S., Hill, David B., Forest, M. Gregory, Mellnik, John W. R., Vasquez, Paula A., McKinley, Scott A.

“…State-of-the-art techniques in passive particle-tracking microscopy provide high-resolution path trajectories of diverse foreign particles in biological…”
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Understanding Fluid Dynamics from Langevin and Fokker–Planck Equations by Medved, Andrei, Davis, Riley, Vasquez, Paula A.

“…The Langevin equations (LE) and the Fokker–Planck (FP) equations are widely used to describe fluid behavior based on coarse-grained approximations of…”
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Polymer models of interphase chromosomes by Vasquez, Paula A, Bloom, Kerry

“…Clear organizational patterns on the genome have emerged from the statistics of population studies of fixed cells. However, how these results translate into…”
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A network scission model for wormlike micellar solutions. I. Model formulation and viscometric flow predictions by VASQUEZ, Paula A, MCKINLEY, Gareth H, COOK, L. Pamela

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DNA loops generate intracentromere tension in mitosis by Lawrimore, Josh, Vasquez, Paula A, Falvo, Michael R, Taylor, 2nd, Russell M, Vicci, Leandra, Yeh, Elaine, Forest, M Gregory, Bloom, Kerry

“…The centromere is the DNA locus that dictates kinetochore formation and is visibly apparent as heterochromatin that bridges sister kinetochores in metaphase…”
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Pericentric chromatin loops function as a nonlinear spring in mitotic force balance by Stephens, Andrew D, Haggerty, Rachel A, Vasquez, Paula A, Vicci, Leandra, Snider, Chloe E, Shi, Fu, Quammen, Cory, Mullins, Christopher, Haase, Julian, Taylor, 2nd, Russell M, Verdaasdonk, Jolien S, Falvo, Michael R, Jin, Yuan, Forest, M Gregory, Bloom, Kerry

“…The mechanisms by which sister chromatids maintain biorientation on the metaphase spindle are critical to the fidelity of chromosome segregation. Active force…”
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Multi-scale kinetics of a field-directed colloidal phase transition by Swan, James W, Vasquez, Paula A, Whitson, Peggy A, Fincke, E. Michael, Wakata, Koichi, Magnus, Sandra H, Winne, Frank De, Barratt, Michael R, Agui, Juan H, Green, Robert D, Hall, Nancy R, Bohman, Donna Y, Bunnell, Charles T, Gast, Alice P, Furst, Eric M

“…Polarizable colloids are expected to form crystalline equilibrium phases when exposed to a steady, uniform field. However, when colloids become localized this…”
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