Search Results - "Varsani, Arvind"

Family Genomoviridae: 2021 taxonomy update by Varsani, Arvind, Krupovic, Mart

“…The family Genomoviridae (phylum Cressdnaviricota , class Repensiviricetes , order Geplafuvirales ) includes viruses with circular single-stranded DNA genomes…”
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SDT: a virus classification tool based on pairwise sequence alignment and identity calculation by Muhire, Brejnev Muhizi, Varsani, Arvind, Martin, Darren Patrick

“…The perpetually increasing rate at which viral full-genome sequences are being determined is creating a pressing demand for computational tools that will aid…”
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VIRIDIC-A Novel Tool to Calculate the Intergenomic Similarities of Prokaryote-Infecting Viruses by Moraru, Cristina, Varsani, Arvind, Kropinski, Andrew M

“…Nucleotide-based intergenomic similarities are useful to understand how viruses are related with each other and to classify them. Here we have developed…”
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Smacoviridae: a new family of animal-associated single-stranded DNA viruses by Varsani, Arvind, Krupovic, Mart

“…Smacoviruses have small (∼2.3-2.9 kb), circular single-stranded DNA genomes encoding rolling circle replication-associated proteins (Rep) and unique capsid…”
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A 2021 taxonomy update for the family Smacoviridae by Krupovic, Mart, Varsani, Arvind

“…The family Smacoviridae (order Cremevirales , class Arfiviricetes , phylum Cressdnaviricota ) is comprised of viruses with small circular single-stranded DNA…”
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Multiple origins of prokaryotic and eukaryotic single-stranded DNA viruses from bacterial and archaeal plasmids by Kazlauskas, Darius, Varsani, Arvind, Koonin, Eugene V., Krupovic, Mart

“…Single-stranded (ss) DNA viruses are a major component of the earth virome. In particular, the circular, Rep-encoding ssDNA (CRESS-DNA) viruses show high…”
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ICTV Virus Taxonomy Profile: Circoviridae by Breitbart, Mya, Delwart, Eric, Rosario, Karyna, Segalés, Joaquim, Varsani, Arvind, Ictv Report Consortium

“…The family Circoviridae comprises viruses with small, circular, single-stranded DNA (ssDNA) genomes, including the smallest known animal viruses. Members of…”
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Global Organization and Proposed Megataxonomy of the Virus World by Koonin, Eugene V, Dolja, Valerian V, Krupovic, Mart, Varsani, Arvind, Wolf, Yuri I, Yutin, Natalya, Zerbini, F Murilo, Kuhn, Jens H

“…Viruses and mobile genetic elements are molecular parasites or symbionts that coevolve with nearly all forms of cellular life. The route of virus replication…”
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Revisiting the taxonomy of the family Circoviridae: establishment of the genus Cyclovirus and removal of the genus Gyrovirus by Rosario, Karyna, Breitbart, Mya, Harrach, Balázs, Segalés, Joaquim, Delwart, Eric, Biagini, Philippe, Varsani, Arvind

“…The family Circoviridae contains viruses with covalently closed, circular, single-stranded DNA (ssDNA) genomes, including the smallest known autonomously…”
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VirSorter2: a multi-classifier, expert-guided approach to detect diverse DNA and RNA viruses by Guo, Jiarong, Bolduc, Ben, Zayed, Ahmed A, Varsani, Arvind, Dominguez-Huerta, Guillermo, Delmont, Tom O, Pratama, Akbar Adjie, Gazitúa, M Consuelo, Vik, Dean, Sullivan, Matthew B, Roux, Simon

“…Viruses are a significant player in many biosphere and human ecosystems, but most signals remain "hidden" in metagenomic/metatranscriptomic sequence datasets…”
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Sequence-based taxonomic framework for the classification of uncultured single-stranded DNA viruses of the family Genomoviridae by Varsani, Arvind, Krupovic, Mart

“…With the advent of metagenomics approaches, a large diversity of known and unknown viruses has been identified in various types of environmental, plant, and…”
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Pervasive Chimerism in the Replication-Associated Proteins of Uncultured Single-Stranded DNA Viruses by Kazlauskas, Darius, Varsani, Arvind, Krupovic, Mart

“…Numerous metagenomic studies have uncovered a remarkable diversity of circular replication-associated protein (Rep)-encoding single-stranded (CRESS) DNA…”
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Changes to virus taxonomy and to the International Code of Virus Classification and Nomenclature ratified by the International Committee on Taxonomy of Viruses (2021) by Walker, Peter J., Siddell, Stuart G., Lefkowitz, Elliot J., Mushegian, Arcady R., Adriaenssens, Evelien M., Alfenas-Zerbini, Poliane, Davison, Andrew J., Dempsey, Donald M., Dutilh, Bas E., García, María Laura, Harrach, Balázs, Harrison, Robert L., Hendrickson, R. Curtis, Junglen, Sandra, Knowles, Nick J., Krupovic, Mart, Kuhn, Jens H., Lambert, Amy J., Łobocka, Małgorzata, Nibert, Max L., Oksanen, Hanna M., Orton, Richard J., Robertson, David L., Rubino, Luisa, Sabanadzovic, Sead, Simmonds, Peter, Smith, Donald B., Suzuki, Nobuhiro, Van Dooerslaer, Koenraad, Vandamme, Anne-Mieke, Varsani, Arvind, Zerbini, Francisco Murilo

“…This article reports the changes to virus taxonomy approved and ratified by the International Committee on Taxonomy of Viruses (ICTV) in March 2021. The entire…”
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Changes to virus taxonomy and the Statutes ratified by the International Committee on Taxonomy of Viruses (2020) by Walker, Peter J., Siddell, Stuart G., Lefkowitz, Elliot J., Mushegian, Arcady R., Adriaenssens, Evelien M., Dempsey, Donald M., Dutilh, Bas E., Harrach, Balázs, Harrison, Robert L., Hendrickson, R. Curtis, Junglen, Sandra, Knowles, Nick J., Kropinski, Andrew M., Krupovic, Mart, Kuhn, Jens H., Nibert, Max, Orton, Richard J., Rubino, Luisa, Sabanadzovic, Sead, Simmonds, Peter, Smith, Donald B., Varsani, Arvind, Zerbini, Francisco Murilo, Davison, Andrew J.

“…This article reports the changes to virus classification and taxonomy approved and ratified by the International Committee on Taxonomy of Viruses (ICTV) in…”
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Changes to virus taxonomy and the International Code of Virus Classification and Nomenclature ratified by the International Committee on Taxonomy of Viruses (2019) by Walker, Peter J., Siddell, Stuart G., Lefkowitz, Elliot J., Mushegian, Arcady R., Dempsey, Donald M., Dutilh, Bas E., Harrach, Balázs, Harrison, Robert L., Hendrickson, R. Curtis, Junglen, Sandra, Knowles, Nick J., Kropinski, Andrew M., Krupovic, Mart, Kuhn, Jens H., Nibert, Max, Rubino, Luisa, Sabanadzovic, Sead, Simmonds, Peter, Varsani, Arvind, Zerbini, Francisco Murilo, Davison, Andrew J.

“…This article reports the changes to virus taxonomy approved and ratified by the International Committee on Taxonomy of Viruses (ICTV) in February 2019. Of…”
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Changes to taxonomy and the International Code of Virus Classification and Nomenclature ratified by the International Committee on Taxonomy of Viruses (2017) by Adams, Michael J., Lefkowitz, Elliot J., King, Andrew M. Q., Harrach, Balázs, Harrison, Robert L., Knowles, Nick J., Kropinski, Andrew M., Krupovic, Mart, Kuhn, Jens H., Mushegian, Arcady R., Nibert, Max, Sabanadzovic, Sead, Sanfaçon, Hélène, Siddell, Stuart G., Simmonds, Peter, Varsani, Arvind, Zerbini, Francisco Murilo, Gorbalenya, Alexander E., Davison, Andrew J.

“…This article lists the changes to virus taxonomy approved and ratified by the International Committee on Taxonomy of Viruses (ICTV) in March 2017…”
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Novel viruses belonging to the family Circoviridae identified in wild American wigeon samples by Khalifeh, Anthony, Custer, Joy M., Kraberger, Simona, Varsani, Arvind

“…Members of the family Circoviridae are known to infect several avian species, with the ability to cause severe disease outcomes in some species. Using a…”
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Kombucha: a novel model system for cooperation and conflict in a complex multi-species microbial ecosystem by May, Alexander, Narayanan, Shrinath, Alcock, Joe, Varsani, Arvind, Maley, Carlo, Aktipis, Athena

“…Kombucha, a fermented tea beverage with an acidic and effervescent taste, is composed of a multispecies microbial ecosystem with complex interactions that are…”
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RDP5: a computer program for analyzing recombination in, and removing signals of recombination from, nucleotide sequence datasets by Martin, Darren P, Varsani, Arvind, Roumagnac, Philippe, Botha, Gerrit, Maslamoney, Suresh, Schwab, Tiana, Kelz, Zena, Kumar, Venkatesh, Murrell, Ben

“…Abstract For the past 20 years, the recombination detection program (RDP) project has focused on the development of a fast, flexible, and easy to use…”
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Taxonomic update for mammalian anelloviruses (family Anelloviridae) by Varsani, Arvind, Opriessnig, Tanja, Celer, Vladimir, Maggi, Fabrizio, Okamoto, Hiroaki, Blomström, Anne-Lie, Cadar, Dániel, Harrach, Balázs, Biagini, Philippe, Kraberger, Simona

“…Anelloviruses are small negative-sense single-stranded DNA viruses with genomes ranging in size from 1.6 to 3.9 kb. The family Anelloviridae comprised 14…”
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