Search Results - "Van De Peer, Y."

Overview of tomato (Solanum lycopersicum) candidate pathogen recognition genes reveals important Solanum R locus dynamics by Andolfo, G., Sanseverino, W., Rombauts, S., Peer, Y., Bradeen, J. M., Carputo, D., Frusciante, L., Ercolano, M. R.

“…To investigate the genome-wide spatial arrangement of R loci, a complete catalogue of tomato (Solanum lycopersicum) and potato (Solanum tuberosum)…”
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Comparative phenomics and targeted use of genomics reveals variation in carbon and nitrogen assimilation among different Brettanomyces bruxellensis strains by Crauwels, S, Van Assche, A, de Jonge, R, Borneman, A. R, Verreth, C, Troels, P, De Samblanx, G, Marchal, K, Van de Peer, Y, Willems, K. A, Verstrepen, K. J, Curtin, C. D, Lievens, B

“…Recent studies have suggested a correlation between genotype groups of Brettanomyces bruxellensis and their source of isolation. To further explore this…”
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Substitution rate calibration of small subunit ribosomal RNA identifies chlorarachniophyte endosymbionts as remnants of green algae by Van De Peer, Y., Rensing, S. A., U.-G. Maier, De Wachter, R.

“…Chlorarachniophytes are amoeboid algae with chlorophyll a and b containing plastics that are surrounded by four membranes instead of two as in plants and green…”
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SpliceMachine: predicting splice sites from high-dimensional local context representations by Degroeve, Sven, Saeys, Yvan, De Baets, Bernard, Rouzé, Pierre, Van de Peer, Yves

“…Motivation: In this age of complete genome sequencing, finding the location and structure of genes is crucial for further molecular research. The accurate…”
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The European small subunit ribosomal RNA database by Van de Peer, Y, De Rijk, P, Wuyts, J, Winkelmans, T, De Wachter, R

“…The European database of the Small Subunit (SSU) Ribosomal RNA is a curated database that strives to collect all information about the primary and secondary…”
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Deletions Involving Long-Range Conserved Nongenic Sequences Upstream and Downstream of FOXL2 as a Novel Disease-Causing Mechanism in Blepharophimosis Syndrome by Beysen, D., Raes, J., Leroy, B.P., Lucassen, A., Yates, J.R.W., Clayton-Smith, J., Ilyina, H., Brooks, S. Sklower, Christin-Maitre, S., Fellous, M., Fryns, J.P., Kim, J.R., Lapunzina, P., Lemyre, E., Meire, F., Messiaen, L.M., Oley, C., Splitt, M., Thomson, J., Peer, Y. Van de, Veitia, R.A., De Paepe, A., De Baere, E.

“…The expression of a gene requires not only a normal coding sequence but also intact regulatory regions, which can be located at large distances from the target…”
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Germline copy number variation associated with Mendelian inheritance of CLL in two families by Brown, J R, Hanna, M, Tesar, B, Pochet, N, Vartanov, A, Fernandes, S M, Werner, L, Ash, M, Roden, C A, MacConaill, L, Hainz, U, Longtine, J, Wang, Y E, Correll, M, Van de Peer, Y, Regev, A, Wu, C, Neuberg, D, Freedman, A S

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Modeling gene and genome duplications in eukaryotes by Maere, S, Bodt, S. de, Raes, J, Casneuf, T, Montagu, M. van, Kuiper, M, Peer, Y. van de

“…Recent analysis of complete eukaryotic genome sequences has revealed that gene duplication has been rampant. Moreover, next to a continuous mode of gene…”
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PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences by Lescot, Magali, Déhais, Patrice, Thijs, Gert, Marchal, Kathleen, Moreau, Yves, Van de Peer, Yves, Rouzé, Pierre, Rombauts, Stephane

“…PlantCARE is a database of plant cis-acting regulatory elements, enhancers and repressors. Regulatory elements are represented by positional matrices,…”
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Genome-wide characterization of the lignification toolbox in Arabidopsis by Raes, J, Rohde, A, Christensen, J.H, Peer, Y. van de, Boerjan, W

“…Lignin, one of the most abundant terrestrial biopolymers, is indispensable for plant structure and defense. With the availability of the full genome sequence,…”
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Database on the structure of small ribosomal subunit RNA by Peer, Y. van de, Jansen, J, Rijk, P. de, Wachter, R. de

“…The Antwerp database on small ribosomal subunit RNA now offers more than 6000 nucleotide sequences (August 1996). All these sequences are stored in the form of…”
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Compilation of small ribosomal subunit RNA sequences by NEFFS, J.-M, VAN DE PEER, Y, HENDRIKS, L, DE WACHTER, R

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Phylogenetic relationships among algae based on complete large-subunit rRNA sequences by Ben Ali, A, De Baere, R, Van der Auwera, G, De Wachter, R, Van de Peer, Y

“…A Ben Ali, R De Baere, G Van der Auwera, R De Wachter and Y Van de Peer Department of Biochemistry, University of Antwerp (UIA), Universiteitsplein 1, B-2610…”
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Structural diversification and neo-functionalization during floral MADS-box gene evolution by C-terminal frameshift mutations by Vandenbussche, M, Theissen, G, Peer, Y. van de, Gerats, T

“…Frameshift mutations generally result in loss‐of‐function changes since they drastically alter the protein sequence downstream of the frameshift site, besides…”
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Exoproteome analysis of Starmerella bombicola results in the discovery of an esterase required for lactonization of sophorolipids by Ciesielska, K., Van Bogaert, I.N., Chevineau, S., Li, B., Groeneboer, S., Soetaert, W., Van de Peer, Y., Devreese, B.

“…The yeast Starmerella bombicola secretes sophorolipids, a family of biosurfactants that find applications in green household products and cosmetics. Over the…”
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Comparative genomics provides evidence for an ancient genome duplication event in fish by Taylor, John S., Van de Peer, Yves, Braasch, Ingo, Meyer, Axel

“…There are approximately 25 000 species in the division Teleostei and most are believed to have arisen during a relatively short period of time…”
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Database on the structure of large subunit ribosomal RNA by De Rijk, Peter, Robbrecht, Elmar, de Hoog, Sybren, Caers, An, Van de Peer, Yves, De Wachter, Rupert

“…The Antwerp database on large subunit ribosomal RNA now contains 607 complete or nearly complete aligned sequences. The alignment incorporates secondary…”
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EST Data Suggest That Poplar Is an Ancient Polyploid by Sterck, Lieven, Rombauts, Stephane, Jansson, Stefan, Sterky, Fredrik, Rouzé, Pierre, Van de Peer, Yves

“…$\bullet$ We analysed the publicly available expressed sequence tag (EST) collections for the genus Populus to examine whether evidence can be found for…”
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Computational approaches to identify promoters and cis-regulatory elements in plant genomes by Rombauts, S, Florquin, K, Lescot, M, Marchal, K, Rouze, P, Peer, Y. van de

“…The identification of promoters and their regulatory elements is one of the major challenges in bioinformatics and integrates comparative, structural, and…”
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Exploring the plant transcriptome through phylogenetic profiling by Vandepoele, K, Peer, Y. van de

“…Publicly available protein sequences represent only a small fraction of the full catalog of genes encoded by the genomes of different plants, such as green…”
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