Search Results - "Van Tassell, Curtis P"

Genomic signatures reveal new evidences for selection of important traits in domestic cattle by Xu, Lingyang, Bickhart, Derek M, Cole, John B, Schroeder, Steven G, Song, Jiuzhou, Tassell, Curtis P Van, Sonstegard, Tad S, Liu, George E

“…We investigated diverse genomic selections using high-density single nucleotide polymorphism data of five distinct cattle breeds. Based on allele frequency…”
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Development and Characterization of a High Density SNP Genotyping Assay for Cattle by Matukumalli, Lakshmi K, Lawley, Cynthia T, Schnabel, Robert D, Taylor, Jeremy F, Allan, Mark F, Heaton, Michael P, O'Connell, Jeff, Moore, Stephen S, Smith, Timothy P.L, Sonstegard, Tad S, Van Tassell, Curtis P

“…The success of genome-wide association (GWA) studies for the detection of sequence variation affecting complex traits in human has spurred interest in the use…”
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Invited review: Reliability computation from the animal model era to the single-step genomic model era by Ben Zaabza, Hafedh, Van Tassell, Curtis P., Vandenplas, Jeremie, VanRaden, Paul, Liu, Zengting, Eding, Herwin, McKay, Stephanie, Haugaard, Katrine, Lidauer, Martin H., Mäntysaari, Esa A., Strandén, Ismo

“…The calculation of exact reliabilities involving the inversion of mixed model equations poses a heavy computational challenge when the system of equations is…”
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Estimating test-day milk yields by modeling proportional daily yields: Going beyond linearity by Wu, Xiao-Lin, Wiggans, George R, Norman, H Duane, Enzenauer, Heather A, Miles, Asha M, Van Tassell, Curtis P, Baldwin, 6th, Ransom L, Burchard, Javier, Dürr, João

“…In the United States, lactation milk yields are not measured directly but are calculated from the test-day milk yields. Still, test-day milk yields are…”
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PreciseEdge raster RGB image segmentation algorithm reduces user input for livestock digital body measurements highly correlated to real-world measurements by Woodward-Greene, M Jennifer, Kinser, Jason M, Sonstegard, Tad S, Sölkner, Johann, Vaisman, Iosif I, Van Tassell, Curtis P

“…Computer vision is a tool that could provide livestock producers with digital body measures and records that are important for animal health and production,…”
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Bovine exome sequence analysis and targeted SNP genotyping of recessive fertility defects BH1, HH2, and HH3 reveal a putative causative mutation in SMC2 for HH3 by McClure, Matthew C, Bickhart, Derek, Null, Dan, Vanraden, Paul, Xu, Lingyang, Wiggans, George, Liu, George, Schroeder, Steve, Glasscock, Jarret, Armstrong, Jon, Cole, John B, Van Tassell, Curtis P, Sonstegard, Tad S

“…The recent discovery of bovine haplotypes with negative effects on fertility in the Brown Swiss, Holstein, and Jersey breeds has allowed producers to identify…”
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Fine mapping of copy number variations on two cattle genome assemblies using high density SNP array by Hou, Yali, Bickhart, Derek M, Hvinden, Miranda L, Li, Congjun, Song, Jiuzhou, Boichard, Didier A, Fritz, Sébastien, Eggen, André, DeNise, Sue, Wiggans, George R, Sonstegard, Tad S, Van Tassell, Curtis P, Liu, George E

“…Btau_4.0 and UMD3.1 are two distinct cattle reference genome assemblies. In our previous study using the low density BovineSNP50 array, we reported a copy…”
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Changes in genetic selection differentials and generation intervals in US Holstein dairy cattle as a result of genomic selection by García-Ruiz, Adriana, Cole, John B., VanRaden, Paul M., Wiggans, George R., Ruiz-López, Felipe J., Van Tassell, Curtis P.

“…Seven years after the introduction of genomic selection in the United States, it is now possible to evaluate the impact of this technology on the population…”
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Daily milk yield correction factors: What are they? by Wu, Xiao-Lin, Wiggans, George R., Norman, H. Duane, Miles, Asha M., Van Tassell, Curtis P., Baldwin VI, Ransom L., Burchard, Javier, Durr, Joao

“…[Display omitted] •ACF and MCF are demonstrated and their intrinsic relationships are revealed.•ACF and MCF improve the accuracy compared with doubling AM or…”
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A multi-tissue atlas of regulatory variants in cattle by Liu, Shuli, Gao, Yahui, Canela-Xandri, Oriol, Wang, Sheng, Yu, Ying, Cai, Wentao, Li, Bingjie, Xiang, Ruidong, Chamberlain, Amanda J., Pairo-Castineira, Erola, D’Mellow, Kenton, Rawlik, Konrad, Xia, Charley, Yao, Yuelin, Navarro, Pau, Rocha, Dominique, Li, Xiujin, Yan, Ze, Li, Congjun, Rosen, Benjamin D., Van Tassell, Curtis P., Vanraden, Paul M., Zhang, Shengli, Ma, Li, Cole, John B., Liu, George E., Tenesa, Albert, Fang, Lingzhao

“…Characterization of genetic regulatory variants acting on livestock gene expression is essential for interpreting the molecular mechanisms underlying traits of…”
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De novo assembly of the cattle reference genome with single-molecule sequencing by Rosen, Benjamin D, Bickhart, Derek M, Schnabel, Robert D, Koren, Sergey, Elsik, Christine G, Tseng, Elizabeth, Rowan, Troy N, Low, Wai Y, Zimin, Aleksey, Couldrey, Christine, Hall, Richard, Li, Wenli, Rhie, Arang, Ghurye, Jay, McKay, Stephanie D, Thibaud-Nissen, Françoise, Hoffman, Jinna, Murdoch, Brenda M, Snelling, Warren M, McDaneld, Tara G, Hammond, John A, Schwartz, John C, Nandolo, Wilson, Hagen, Darren E, Dreischer, Christian, Schultheiss, Sebastian J, Schroeder, Steven G, Phillippy, Adam M, Cole, John B, Van Tassell, Curtis P, Liu, George, Smith, Timothy P L, Medrano, Juan F

“…Abstract Background Major advances in selection progress for cattle have been made following the introduction of genomic tools over the past 10–12 years. These…”
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Assignment of virus and antimicrobial resistance genes to microbial hosts in a complex microbial community by combined long-read assembly and proximity ligation by Bickhart, Derek M, Watson, Mick, Koren, Sergey, Panke-Buisse, Kevin, Cersosimo, Laura M, Press, Maximilian O, Van Tassell, Curtis P, Van Kessel, Jo Ann S, Haley, Bradd J, Kim, Seon Woo, Heiner, Cheryl, Suen, Garret, Bakshy, Kiranmayee, Liachko, Ivan, Sullivan, Shawn T, Myer, Phillip R, Ghurye, Jay, Pop, Mihai, Weimer, Paul J, Phillippy, Adam M, Smith, Timothy P L

“…We describe a method that adds long-read sequencing to a mix of technologies used to assemble a highly complex cattle rumen microbial community, and provide a…”
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Genome-wide association analysis of thirty one production, health, reproduction and body conformation traits in contemporary U.S. Holstein cows by Cole, John B, Wiggans, George R, Ma, Li, Sonstegard, Tad S, Lawlor, Jr, Thomas J, Crooker, Brian A, Van Tassell, Curtis P, Yang, Jing, Wang, Shengwen, Matukumalli, Lakshmi K, Da, Yang

“…Genome-wide association analysis is a powerful tool for annotating phenotypic effects on the genome and knowledge of genes and chromosomal regions associated…”
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Copy number variation of individual cattle genomes using next-generation sequencing by Bickhart, Derek M, Hou, Yali, Schroeder, Steven G, Alkan, Can, Cardone, Maria Francesca, Matukumalli, Lakshmi K, Song, Jiuzhou, Schnabel, Robert D, Ventura, Mario, Taylor, Jeremy F, Garcia, Jose Fernando, Van Tassell, Curtis P, Sonstegard, Tad S, Eichler, Evan E, Liu, George E

“…Copy number variations (CNVs) affect a wide range of phenotypic traits; however, CNVs in or near segmental duplication regions are often intractable. Using a…”
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Effect of artificial selection on runs of homozygosity in u.s. Holstein cattle by Kim, Eui-Soo, Cole, John B, Huson, Heather, Wiggans, George R, Van Tassell, Curtis P, Crooker, Brian A, Liu, George, Da, Yang, Sonstegard, Tad S

“…The intensive selection programs for milk made possible by mass artificial insemination increased the similarity among the genomes of North American (NA)…”
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Signatures of selection and environmental adaptation across the goat genome post-domestication by Bertolini, Francesca, Servin, Bertrand, Talenti, Andrea, Rochat, Estelle, Kim, Eui Soo, Oget, Claire, Palhière, Isabelle, Crisà, Alessandra, Catillo, Gennaro, Steri, Roberto, Amills, Marcel, Colli, Licia, Marras, Gabriele, Milanesi, Marco, Nicolazzi, Ezequiel, Rosen, Benjamin D, Van Tassell, Curtis P, Guldbrandtsen, Bernt, Sonstegard, Tad S, Tosser-Klopp, Gwenola, Stella, Alessandra, Rothschild, Max F, Joost, Stéphane, Crepaldi, Paola

“…Since goat was domesticated 10,000 years ago, many factors have contributed to the differentiation of goat breeds and these are classified mainly into two…”
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Genome-wide SNP profiling of worldwide goat populations reveals strong partitioning of diversity and highlights post-domestication migration routes by Colli, Licia, Milanesi, Marco, Talenti, Andrea, Bertolini, Francesca, Chen, Minhui, Crisà, Alessandra, Daly, Kevin Gerard, Del Corvo, Marcello, Guldbrandtsen, Bernt, Lenstra, Johannes A, Rosen, Benjamin D, Vajana, Elia, Catillo, Gennaro, Joost, Stéphane, Nicolazzi, Ezequiel Luis, Rochat, Estelle, Rothschild, Max F, Servin, Bertrand, Sonstegard, Tad S, Steri, Roberto, Van Tassell, Curtis P, Ajmone-Marsan, Paolo, Crepaldi, Paola, Stella, Alessandra

“…Goat populations that are characterized within the AdaptMap project cover a large part of the worldwide distribution of this species and provide the…”
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The Relationship between Runs of Homozygosity and Inbreeding in Jersey Cattle under Selection by Kim, Eui-Soo, Sonstegard, Tad S, Van Tassell, Curtis P, Wiggans, George, Rothschild, Max F

“…Inbreeding is often an inevitable outcome of strong directional artificial selection but on average it reduces population fitness with increased frequency of…”
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Large-Sample Genome-Wide Association Study of Resistance to Retained Placenta in U.S. Holstein Cows by Prakapenka, Dzianis, Liang, Zuoxiang, Zaabza, Hafedh B, VanRaden, Paul M, Van Tassell, Curtis P, Da, Yang

“…A genome-wide association study of resistance to retained placenta (RETP) using 632,212 Holstein cows and 74,747 SNPs identified 200 additive effects with…”
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A Million-Cow Validation of a Chromosome 14 Region Interacting with All Chromosomes for Fat Percentage in U.S. Holstein Cows by Prakapenka, Dzianis, Liang, Zuoxiang, Zaabza, Hafedh B, VanRaden, Paul M, Van Tassell, Curtis P, Da, Yang

“…A genome-wide association study (GWAS) of fat percentage (FPC) using 1,231,898 first lactation cows and 75,198 SNPs confirmed a previous result that a Chr14…”
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