Search Results - "Van Den Berg, David J."

Multi-ancestry epigenome-wide analyses identify methylated sites associated with aortic augmentation index in TOPMed MESA by Hu, Xiaowei, Logan, Jeongok G., Kwon, Younghoon, Lima, Joao A. C., Jacobs, David R., Duprez, Daniel, Brumback, Lyndia, Taylor, Kent D., Durda, Peter, Johnson, W. Craig, Cornell, Elaine, Guo, Xiuqing, Liu, Yongmei, Tracy, Russell P., Blackwell, Thomas W., Papanicolaou, George, Mitchell, Gary F., Rich, Stephen S., Rotter, Jerome I., Van Den Berg, David J., Chirinos, Julio A., Hughes, Timothy M., Garrett-Bakelman, Francine E., Manichaikul, Ani

“…Despite the prognostic value of arterial stiffness (AS) and pulsatile hemodynamics (PH) for cardiovascular morbidity and mortality, epigenetic modifications…”
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Green tea intake, MTHFR/TYMS genotype and breast cancer risk: the Singapore Chinese Health Study by Inoue, Maki, Robien, Kim, Wang, Renwei, Van Den Berg, David J., Koh, Woon-Puay, Yu, Mimi C.

“…The tea polyphenol (−)-epigallocatechin-3-gallate (EGCG) has been reported to act as a cancer preventive agent through folate pathway inhibition in…”
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Data-adaptive multi-locus association testing in subjects with arbitrary genealogical relationships by Gong, Gail, Wang, Wei, Hsieh, Chih-Lin, Van Den Berg, David J, Haiman, Christopher, Oakley-Girvan, Ingrid, Whittemore, Alice S

“…Genome-wide sequencing enables evaluation of associations between traits and combinations of variants in genes and pathways. But such evaluation requires…”
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A genome-wide meta-analysis of nodular sclerosing Hodgkin lymphoma identifies risk loci at 6p21.32 by Cozen, Wendy, Li, Dalin, Best, Timothy, Van Den Berg, David J., Gourraud, Pierre-Antoine, Cortessis, Victoria K., Skol, Andrew D., Mack, Thomas M., Glaser, Sally L., Weiss, Lawrence M., Nathwani, Bharat N., Bhatia, Smita, Schumacher, Fredrick R., Edlund, Christopher K., Hwang, Amie E., Slager, Susan L., Fredericksen, Zachary S., Strong, Louise C., Habermann, Thomas M., Link, Brian K., Cerhan, James R., Robison, Leslie L., Conti, David V., Onel, Kenan

“…Nodular sclerosing Hodgkin lymphoma (NSHL) is a distinct, highly heritable Hodgkin lymphoma subtype. We undertook a genome-wide meta-analysis of 393…”
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Snagger: a user-friendly program for incorporating additional information for tagSNP selection by Edlund, Christopher K, Lee, Won H, Li, Dalin, Van Den Berg, David J, Conti, David V

“…There has been considerable effort focused on developing efficient programs for tagging single-nucleotide polymorphisms (SNPs). Many of these programs do not…”
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A genome-wide scan for breast cancer risk haplotypes among African American women by Song, Chi, Chen, Gary K, Millikan, Robert C, Ambrosone, Christine B, John, Esther M, Bernstein, Leslie, Zheng, Wei, Hu, Jennifer J, Ziegler, Regina G, Nyante, Sarah, Bandera, Elisa V, Ingles, Sue A, Press, Michael F, Deming, Sandra L, Rodriguez-Gil, Jorge L, Chanock, Stephen J, Wan, Peggy, Sheng, Xin, Pooler, Loreall C, Van Den Berg, David J, Le Marchand, Loic, Kolonel, Laurence N, Henderson, Brian E, Haiman, Chris A, Stram, Daniel O

“…Genome-wide association studies (GWAS) simultaneously investigating hundreds of thousands of single nucleotide polymorphisms (SNP) have become a powerful tool…”
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Interleukin-6-Related Genotypes, Body Mass Index, and Risk of Multiple Myeloma and Plasmacytoma by Cozen, Wendy, Gebregziabher, Mulugeta, Conti, David V, Van Den Berg, David J, Coetzee, Gerhard A, Wang, Sophia S, Rothman, Nathaniel, Bernstein, Leslie, Hartge, Patricia, Morhbacher, Ann, Coetzee, Simon G, Salam, Muhammad T, Wang, Wei, Zadnick, John, Ingles, Sue A

“…Interleukin-6 (IL-6) promotes normal plasma cell development and proliferation of myeloma cells in culture. We evaluated IL-6 genotypes and body mass index…”
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No association between the SRD5A2 gene A49T missense variant and prostate cancer risk: lessons learned by Pearce, C. Leigh, Van Den Berg, David J., Makridakis, Nick, Reichardt, Juergen K.V., Ross, Ronald K., Pike, Malcolm C., Kolonel, Laurence N., Henderson, Brian E.

“…The steroid 5-alpha reductase type II gene (SRD5A2) encodes the enzyme which converts testosterone (T) to the more active androgen dihydrotestosterone. A…”
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Epigenome-wide association study of mitochondrial genome copy number by Wang, Penglong, Castellani, Christina A, Yao, Jie, Huan, Tianxiao, Bielak, Lawrence F, Zhao, Wei, Haessler, Jeffrey, Joehanes, Roby, Sun, Xianbang, Guo, Xiuqing, Longchamps, Ryan J, Manson, JoAnn E, Grove, Megan L, Bressler, Jan, Taylor, Kent D, Lappalainen, Tuuli, Kasela, Silva, Van Den Berg, David J, Hou, Lifang, Reiner, Alexander, Liu, Yongmei, Boerwinkle, Eric, Smith, Jennifer A, Peyser, Patricia A, Fornage, Myriam, Rich, Stephen S, Rotter, Jerome I, Kooperberg, Charles, Arking, Dan E, Levy, Daniel, Liu, Chunyu

“…Abstract We conducted cohort- and race-specific epigenome-wide association analyses of mitochondrial deoxyribonucleic acid (mtDNA) copy number (mtDNA CN)…”
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A methylation risk score for chronic kidney disease: a HyperGEN study by Jones, Alana C., Patki, Amit, Srinivasasainagendra, Vinodh, Hidalgo, Bertha A., Tiwari, Hemant K., Limdi, Nita A., Armstrong, Nicole D., Chaudhary, Ninad S., Minniefield, Bré, Absher, Devin, Arnett, Donna K., Lange, Leslie A., Lange, Ethan M., Young, Bessie A., Diamantidis, Clarissa J., Rich, Stephen S., Mychaleckyj, Josyf C., Rotter, Jerome I., Taylor, Kent D., Kramer, Holly J., Tracy, Russell P., Durda, Peter, Kasela, Silva, Lappalinen, Tuuli, Liu, Yongmei, Johnson, W. Craig, Van Den Berg, David J., Franceschini, Nora, Liu, Simin, Mouton, Charles P., Bhatti, Parveen, Horvath, Steve, Whitsel, Eric A., Irvin, Marguerite R.

“…Chronic kidney disease (CKD) impacts about 1 in 7 adults in the United States, but African Americans (AAs) carry a disproportionately higher burden of disease…”
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A Genome Screen of Families with Multiple Cases of Prostate Cancer: Evidence of Genetic Heterogeneity by Hsieh, Chih-lin, Oakley-Girvan, Ingrid, Balise, Raymond R., Halpern, Jerry, Gallagher, Richard P., Wu, Anna H., Kolonel, Laurence N., O'Brien, Laura E., Lin, Iping G., Van Den Berg, David J., Teh, Chong-Ze, West, Dee W., Whittemore, Alice S.

“…We conducted a genomewide screen for prostate cancer–susceptibility genes on the basis of data from 98 families from the United States and Canada that had…”
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Genome-wide interaction studies reveal sex-specific asthma risk alleles by Myers, Rachel A, Scott, Nicole M, Gauderman, W James, Qiu, Weiliang, Mathias, Rasika A, Romieu, Isabelle, Levin, Albert M, Pino-Yanes, Maria, Graves, Penelope E, Villarreal, Albino Barraza, Beaty, Terri H, Carey, Vincent J, Croteau-Chonka, Damien C, del Rio Navarro, Blanca, Edlund, Christopher, Hernandez-Cadena, Leticia, Navarro-Olivos, Efrain, Padhukasahasram, Badri, Salam, Muhammad T, Torgerson, Dara G, Van den Berg, David J, Vora, Hita, Bleecker, Eugene R, Meyers, Deborah A, Williams, L Keoki, Martinez, Fernando D, Burchard, Esteban G, Barnes, Kathleen C, Gilliland, Frank D, Weiss, Scott T, London, Stephanie J, Raby, Benjamin A, Ober, Carole, Nicolae, Dan L

“…Asthma is a complex disease with sex-specific differences in prevalence. Candidate gene studies have suggested that genotype-by-sex interaction effects on…”
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Genetic variations on chromosomes 5p15 and 15q25 and bladder cancer risk: findings from the Los Angeles―Shanghai bladder case―control study by GAGO-DOMINGUEZ, Manuela, XUEJUAN JIANG, VAN DEN BERG, David J, CONTI, David V, CASTELAO, Jose Esteban, STERN, Mariana C, CORTESSIS, Victoria K, PIKE, Malcolm C, XIANG, Yong-Bing, GAO, Yu-Tang, YUAN, Jian-Min

“…Genome-wide association studies have associated common variations at chromosomes 5p15 and 15q25 with lung cancer risk. The 5p15 locus has also been associated…”
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A genome-wide association study of breast cancer in women of African ancestry by Chen, Fang, Chen, Gary K., Stram, Daniel O., Millikan, Robert C., Ambrosone, Christine B., John, Esther M., Bernstein, Leslie, Zheng, Wei, Palmer, Julie R., Hu, Jennifer J., Rebbeck, Tim R., Ziegler, Regina G., Nyante, Sarah, Bandera, Elisa V., Ingles, Sue A., Press, Michael F., Ruiz-Narvaez, Edward A., Deming, Sandra L., Rodriguez-Gil, Jorge L., DeMichele, Angela, Chanock, Stephen J., Blot, William, Signorello, Lisa, Cai, Qiuyin, Li, Guoliang, Long, Jirong, Huo, Dezheng, Zheng, Yonglan, Cox, Nancy J., Olopade, Olufunmilayo I., Ogundiran, Temidayo O., Adebamowo, Clement, Nathanson, Katherine L., Domchek, Susan M., Simon, Michael S., Hennis, Anselm, Nemesure, Barbara, Wu, Suh-Yuh, Leske, M. Cristina, Ambs, Stefan, Hutter, Carolyn M., Young, Alicia, Kooperberg, Charles, Peters, Ulrike, Rhie, Suhn K., Wan, Peggy, Sheng, Xin, Pooler, Loreall C., Van Den Berg, David J., Le Marchand, Loic, Kolonel, Laurence N., Henderson, Brian E., Haiman, Christopher A.

“…Genome-wide association studies (GWAS) in diverse populations are needed to reveal variants that are more common and/or limited to defined populations. We…”
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Breast cancer susceptibility variants and mammographic density phenotypes in norwegian postmenopausal women by Ellingjord-Dale, Merete, Grotmol, Tom, Lee, Eunjung, Van Den Berg, David J, Hofvind, Solveig, Couto, Elisabeth, Sovio, Ulla, Dos-Santos-Silva, Isabel, Ursin, Giske

“…Mammographic density (MD) is one of the strongest known breast cancer risk factors. Twin studies have suggested that a large part of the variation in MD is…”
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Common alleles in candidate susceptibility genes associated with risk and development of epithelial ovarian cancer by Notaridou, Maria, Quaye, Lydia, Dafou, Dimitra, Jones, Chris, Song, Honglin, Høgdall, Estrid, Kjaer, Susanne K., Christensen, Lise, Høgdall, Claus, Blaakaer, Jan, McGuire, Valerie, Wu, Anna H., Van Den Berg, David J., Pike, Malcolm C., Gentry‐Maharaj, Aleksandra, Wozniak, Eva, Sher, Tanya, Jacobs, Ian J., Tyrer, Jonathan, Schildkraut, Joellen M., Moorman, Patricia G., Iversen, Edwin S., Jakubowska, Anna, Mędrek, Krzysztof, Lubiński, Jan, Ness, Roberta B., Moysich, Kirsten B., Lurie, Galina, Wilkens, Lynne R., Carney, Michael E., Wang‐Gohrke, Shan, Doherty, Jennifer A., Rossing, Mary Anne, Beckmann, Matthias W., Thiel, Falk C., Ekici, Arif B., Chen, Xiaoqing, Beesley, Jonathan, Gronwald, Jacek, Fasching, Peter A., Chang‐Claude, Jenny, Goodman, Marc T., Chenevix‐Trench, Georgia, Berchuck, Andrew, Pearce, C. Leigh, Whittemore, Alice S., Menon, Usha, Pharoah, Paul D.P., Gayther, Simon A., Ramus, Susan J.

“…Common germline genetic variation in the population is associated with susceptibility to epithelial ovarian cancer. Microcell‐mediated chromosome transfer and…”
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Assessment of Multifactor Gene-Environment Interactions and Ovarian Cancer Risk: Candidate Genes, Obesity, and Hormone-Related Risk Factors by Usset, Joseph L, Raghavan, Rama, Tyrer, Jonathan P, McGuire, Valerie, Sieh, Weiva, Webb, Penelope, Chang-Claude, Jenny, Rudolph, Anja, Anton-Culver, Hoda, Berchuck, Andrew, Brinton, Louise, Cunningham, Julie M, DeFazio, Anna, Doherty, Jennifer A, Edwards, Robert P, Gayther, Simon A, Gentry-Maharaj, Aleksandra, Goodman, Marc T, Høgdall, Estrid, Jensen, Allan, Johnatty, Sharon E, Kiemeney, Lambertus A, Kjaer, Susanne K, Larson, Melissa C, Lurie, Galina, Massuger, Leon, Menon, Usha, Modugno, Francesmary, Moysich, Kirsten B, Ness, Roberta B, Pike, Malcolm C, Ramus, Susan J, Rossing, Mary Anne, Rothstein, Joseph, Song, Honglin, Thompson, Pamela J, van den Berg, David J, Vierkant, Robert A, Wang-Gohrke, Shan, Wentzensen, Nicolas, Whittemore, Alice S, Wilkens, Lynne R, Wu, Anna H, Yang, Hannah, Pearce, Celeste Leigh, Schildkraut, Joellen M, Pharoah, Paul, Goode, Ellen L, Fridley, Brooke L

“…Many epithelial ovarian cancer (EOC) risk factors relate to hormone exposure and elevated estrogen levels are associated with obesity in postmenopausal women…”
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Role of Members of the Wnt Gene Family in Human Hematopoiesis by Van Den Berg, David J., Sharma, Arun K., Bruno, Edward, Hoffman, Ron

“…The hematopoietic system is derived from ventral mesoderm. A number of genes that are important in mesoderm development have been identified including members…”
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Polymorphisms in hormone metabolism and growth factor genes and mammographic density in Norwegian postmenopausal hormone therapy users and non-users by Ellingjord-Dale, Merete, Lee, Eunjung, Couto, Elisabeth, Ozhand, Ali, Qureshi, Samera, Hofvind, Solveig, Van Den Berg, David J, Akslen, Lars A, Grotmol, Tom, Ursin, Giske

“…Mammographic density (MD) is one of the strongest known breast cancer risk factors. Estrogen and progestin therapy (EPT) has been associated with increases in…”
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Reproducibility and reliability of SNP analysis using human cellular DNA at or near nanogram levels by Okitsu, Cindy Y, Van Den Berg, David J, Lieber, Michael R, Hsieh, Chih-Lin

“…Illumina SNP arrays have been routinely used for genome-wide association studies to identify potential biomarkers for various diseases. The recommended 200 ng…”
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