Search Results - "Valentine V. Trotter"

High-throughput protein characterization by complementation using DNA barcoded fragment libraries by Biggs, Bradley W, Price, Morgan N, Lai, Dexter, Escobedo, Jasmine, Fortanel, Yuridia, Huang, Yolanda Y, Kim, Kyoungmin, Trotter, Valentine V, Kuehl, Jennifer V, Lui, Lauren M, Chakraborty, Romy, Deutschbauer, Adam M, Arkin, Adam P

“…Our ability to predict, control, or design biological function is fundamentally limited by poorly annotated gene function. This can be particularly challenging…”
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Large-scale genetic characterization of the model sulfate-reducing bacterium, Desulfovibrio vulgaris Hildenborough by Trotter, Valentine V, Shatsky, Maxim, Price, Morgan N, Juba, Thomas R, Zane, Grant M, De León, Kara B, Majumder, Erica L-W, Gui, Qin, Ali, Rida, Wetmore, Kelly M, Kuehl, Jennifer V, Arkin, Adam P, Wall, Judy D, Deutschbauer, Adam M, Chandonia, John-Marc, Butland, Gareth P

“…Sulfate-reducing bacteria (SRB) are obligate anaerobes that can couple their growth to the reduction of sulfate. Despite the importance of SRB to global…”
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Functional genetics of human gut commensal Bacteroides thetaiotaomicron reveals metabolic requirements for growth across environments by Liu, Hualan, Shiver, Anthony L., Price, Morgan N., Carlson, Hans K., Trotter, Valentine V., Chen, Yan, Escalante, Veronica, Ray, Jayashree, Hern, Kelsey E., Petzold, Christopher J., Turnbaugh, Peter J., Huang, Kerwyn Casey, Arkin, Adam P., Deutschbauer, Adam M.

“…Harnessing the microbiota for beneficial outcomes is limited by our poor understanding of the constituent bacteria, as the functions of most of their genes are…”
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Fitness factors impacting survival of a subsurface bacterium in contaminated groundwater by Thorgersen, Michael P, Goff, Jennifer L, Trotter, Valentine V, Poole Ii, Farris L, Arkin, Adam P, Deutschbauer, Adam M, Adams, Michael W W

“…Many factors contribute to the ability of a microbial species to persist when encountering complexly contaminated environments, including time of exposure, the…”
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Molecular mechanisms and environmental adaptations of flagellar loss and biofilm growth of Rhodanobacter under environmental stress by Chen, Mingfei, Trotter, Valentine V, Walian, Peter J, Chen, Yan, Lopez, Romario, Lui, Lauren M, Nielsen, Torben N, Malana, Ria Gracielle, Thorgersen, Michael P, Hendrickson, Andrew J, Carion, Héloïse, Deutschbauer, Adam M, Petzold, Christopher J, Smith, Heidi J, Arkin, Adam P, Adams, Michael W W, Fields, Matthew W, Chakraborty, Romy

“…Biofilms aid bacterial adhesion to surfaces via direct and indirect mechanisms, and formation of biofilms is considered as an important strategy for adaptation…”
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Deciphering Microbial Metal Toxicity Responses via Random Bar Code Transposon Site Sequencing and Activity-Based Metabolomics by Thorgersen, Michael P, Xue, Jingchuan, Majumder, Erica L W, Trotter, Valentine V, Ge, Xiaoxuan, Poole, 2nd, Farris L, Owens, Trenton K, Lui, Lauren M, Nielsen, Torben N, Arkin, Adam P, Deutschbauer, Adam M, Siuzdak, Gary, Adams, Michael W W

“…To uncover metal toxicity targets and defense mechanisms of the facultative anaerobe sp. strain MT58 (MT58), we used a multiomic strategy combining two global…”
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Independence of Nitrate and Nitrite Inhibition of Desulfovibrio vulgaris Hildenborough and Use of Nitrite as a Substrate for Growth by Korte, Hannah L, Saini, Avneesh, Trotter, Valentine V, Butland, Gareth P, Arkin, Adam P, Wall, Judy D

“…Sulfate-reducing microbes, such as Desulfovibrio vulgaris Hildenborough, cause “souring” of petroleum reservoirs through produced sulfide and precipitate heavy…”
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Draft Genome Sequence of Pedococcus sp. Strain 5OH_020, Isolated from California Grassland Soil by Green, Myka A, Alvarez-Aponte, Zoila I, Trotter, Valentine V, Taga, Michiko E

“…The draft genome sequence of the soil bacterium sp. strain 5OH_020, isolated on a natural cobalamin analog, comprises 4.4 Mbp, with 4,108 protein-coding genes…”
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Unintended Laboratory-Driven Evolution Reveals Genetic Requirements for Biofilm Formation by Desulfovibrio vulgaris Hildenborough by De León, Kara B, Zane, Grant M, Trotter, Valentine V, Krantz, Gregory P, Arkin, Adam P, Butland, Gareth P, Walian, Peter J, Fields, Matthew W, Wall, Judy D

“…Biofilms of sulfate-reducing bacteria (SRB) are of particular interest as members of this group are culprits in corrosion of industrial metal and concrete…”
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Bacterial Interactomes: Interacting Protein Partners Share Similar Function and Are Validated in Independent Assays More Frequently Than Previously Reported by Shatsky, Maxim, Allen, Simon, Gold, Barbara L., Liu, Nancy L., Juba, Thomas R., Reveco, Sonia A., Elias, Dwayne A., Prathapam, Ramadevi, He, Jennifer, Yang, Wenhong, Szakal, Evelin D., Liu, Haichuan, Singer, Mary E., Geller, Jil T., Lam, Bonita R., Saini, Avneesh, Trotter, Valentine V., Hall, Steven C., Fisher, Susan J., Brenner, Steven E., Chhabra, Swapnil R., Hazen, Terry C., Wall, Judy D., Witkowska, H. Ewa, Biggin, Mark D., Chandonia, John-Marc, Butland, Gareth

“…Numerous affinity purification-mass spectrometry (AP-MS) and yeast two-hybrid screens have each defined thousands of pairwise protein-protein interactions…”
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Deletion Mutants, Archived Transposon Library, and Tagged Protein Constructs of the Model Sulfate-Reducing Bacterium Desulfovibrio vulgaris Hildenborough by Wall, Judy D, Zane, Grant M, Juba, Thomas R, Kuehl, Jennifer V, Ray, Jayashree, Chhabra, Swapnil R, Trotter, Valentine V, Shatsky, Maxim, De León, Kara B, Keller, Kimberly L, Bender, Kelly S, Butland, Gareth, Arkin, Adam P, Deutschbauer, Adam M

“…The dissimilatory sulfate-reducing Hildenborough (ATCC 29579) was chosen by the research collaboration ENIGMA to explore tools and protocols for bringing this…”
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Deciphering Microbial Metal Toxicity Responses using RB-TnSeq and Activity-Based Metabolomics by Thorgersen, Michael P., Xue, Jingchuan, Majumder, Erica L.W., Trotter, Valentine V., Ge, Xiaoxuan, Poole, Farris L., Owens, Trenton K., Lui, Lauren M., Nielsen, Torben N., Arkin, Adam P., Deutschbauer, Adam M., Siuzdak, Gary, Adams, Michael W.

“…To uncover metal toxicity targets and defense mechanisms of the facultative anaerobe Pantoea sp. strain MT58 (MT58), we used a multiomic strategy combining two…”
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Independence of Nitrate and Nitrite Inhibition of Desulfovibrio vulgaris Hildenborough and Use of Nitrite as a Substrate for Growth by Korte, Hannah L., Saini, Avneesh, Trotter, Valentine V., Butland, Gareth P., Arkin, Adam P., Wall, Judy D.

“…Sulfate-reducing microbes, such as Desulfovibrio vulgaris Hildenborough, cause “souring” of petroleum reservoirs through produced sulfide and precipitate heavy…”
Get full text

Unintended Laboratory-Driven Evolution Reveals Genetic Requirements for Biofilm Formation by Desulfovibrio vulgaris Hildenborough by De León, Kara B., Zane, Grant M., Trotter, Valentine V., Krantz, Gregory P., Arkin, Adam P., Butland, Gareth P., Walian, Peter J., Fields, Matthew W., Wall, Judy D., Parsek, ed., Matthew R., Spormann, Alfred, Finkel, Steven

“…ABSTRACT Biofilms of sulfate-reducing bacteria (SRB) are of particular interest as members of this group are culprits in corrosion of industrial metal and…”
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Bacterial Interactomes: Interacting Protein Partners Share Similar Function and Are Validated in Independent Assays More Frequently Than Previously Reported by Shatsky, Maxim, Allen, Simon, Gold, Barbara L., Liu, Nancy L., Juba, Thomas R., Reveco, Sonia A., Elias, Dwayne A., Prathapam, Ramadevi, He, Jennifer, Yang, Wenhong, Szakal, Evelin D., Liu, Haichuan, Singer, Mary E., Geller, Jil T., Lam, Bonita R., Saini, Avneesh, Trotter, Valentine V., Hall, Steven C., Fisher, Susan J., Brenner, Steven E., Chhabra, Swapnil R., Hazen, Terry C., Wall, Judy D., Witkowska, H. Ewa, Biggin, Mark D., Chandonia, John-Marc, Butland, Gareth

“…© 2016 by The American Society for Biochemistry and Molecular Biology, Inc. Numerous affinity purification-mass spectrometry (APMS) and yeast two-hybrid…”
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Bacterial Interactomes: Interacting Protein Partners Share Similar Function and Are Validated in Independent Assays More Frequently Than Previously Reported by Shatsky, Maxim, Allen, Simon, Gold, Barbara L., Liu, Nancy L., Juba, Thomas R., Reveco, Sonia A., Elias, Dwayne A., Prathapam, Ramadevi, He, Jennifer, Yang, Wenhong, Szakal, Evelin D., Liu, Haichuan, Singer, Mary E., Geller, Jil T., Lam, Bonita R., Saini, Avneesh, Trotter, Valentine V., Hall, Steven C., Fisher, Susan J., Brenner, Steven E., Chhabra, Swapnil R., Hazen, Terry C., Wall, Judy D., Witkowska, H. Ewa, Biggin, Mark D., Chandonia, John-Marc, Butland, Gareth

“…© 2016 by The American Society for Biochemistry and Molecular Biology, Inc. Numerous affinity purification-mass spectrometry (APMS) and yeast two-hybrid…”
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Unintended Laboratory-Driven Evolution Reveals Genetic Requirements for Biofilm Formation by italic toggle="yes">Desulfovibrio vulgaris /italic> Hildenborough by Kara B. De León, Grant M. Zane, Valentine V. Trotter, Gregory P. Krantz, Adam P. Arkin, Gareth P. Butland, Peter J. Walian, Matthew W. Fields, Judy D. Wall

“…ABSTRACT Biofilms of sulfate-reducing bacteria (SRB) are of particular interest as members of this group are culprits in corrosion of industrial metal and…”
Get full text