Search Results - "VRANIZAN, Karen"

GO-Elite: a flexible solution for pathway and ontology over-representation by ZAMBON, Alexander C, GAJ, Stan, HO, Isaac, HANSPERS, Kristina, VRANIZAN, Karen, EVELO, Chris T, CONKLIN, Bruce R, PICO, Alexander R, SALOMONIS, Nathan

“…We introduce GO-Elite, a flexible and powerful pathway analysis tool for a wide array of species, identifiers (IDs), pathways, ontologies and gene sets. In…”
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GenMAPP 2: new features and resources for pathway analysis by Salomonis, Nathan, Hanspers, Kristina, Zambon, Alexander C, Vranizan, Karen, Lawlor, Steven C, Dahlquist, Kam D, Doniger, Scott W, Stuart, Josh, Conklin, Bruce R, Pico, Alexander R

“…Microarray technologies have evolved rapidly, enabling biologists to quantify genome-wide levels of gene expression, alternative splicing, and sequence…”
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p63 Regulates Olfactory Stem Cell Self-Renewal and Differentiation by Fletcher, Russell B., Prasol, Melanie S., Estrada, Jose, Baudhuin, Ariane, Vranizan, Karen, Choi, Yoon Gi, Ngai, John

“…The olfactory epithelium is a sensory neuroepithelium that supports adult neurogenesis and tissue regeneration following injury, making it an excellent model…”
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Alternative splicing regulates mouse embryonic stem cell pluripotency and differentiation by Salomonis, Nathan, Schlieve, Christopher R, Pereira, Laura, Wahlquist, Christine, Colas, Alexandre, Zambon, Alexander C, Vranizan, Karen, Spindler, Matthew J, Pico, Alexander R, Cline, Melissa S, Clark, Tyson A, Williams, Alan, Blume, John E, Samal, Eva, Mercola, Mark, Merrill, Bradley J, Conklin, Bruce R

“…Two major goals of regenerative medicine are to reproducibly transform adult somatic cells into a pluripotent state and to control their differentiation into…”
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GenMAPP, a new tool for viewing and analyzing microarray data on biological pathways by Conklin, Bruce R, Dahlquist, Kam D, Salomonis, Nathan, Vranizan, Karen, Lawlor, Steven C

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An evolutionary conserved role for anaplastic lymphoma kinase in behavioral responses to ethanol by Lasek, Amy W, Lim, Jana, Kliethermes, Christopher L, Berger, Karen H, Joslyn, Geoff, Brush, Gerry, Xue, Liquan, Robertson, Margaret, Moore, Monica S, Vranizan, Karen, Morris, Stephan W, Schuckit, Marc A, White, Raymond L, Heberlein, Ulrike

“…Anaplastic lymphoma kinase (Alk) is a gene expressed in the nervous system that encodes a receptor tyrosine kinase commonly known for its oncogenic function in…”
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Developmental and evolutionary basis for drought tolerance of the Anopheles gambiae embryo by Goltsev, Yury, Rezende, Gustavo L., Vranizan, Karen, Lanzaro, Greg, Valle, Denise, Levine, Michael

“…During the evolution of the Diptera there is a dramatic modification of the embryonic ectoderm, whereby mosquitoes contain separate amnion and serosa lineages…”
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Time- and exercise-dependent gene regulation in human skeletal muscle by Zambon, Alexander C, McDearmon, Erin L, Salomonis, Nathan, Vranizan, Karen M, Johansen, Kirsten L, Adey, Deborah, Takahashi, Joseph S, Schambelan, Morris, Conklin, Bruce R

“…Skeletal muscle remodeling is a critical component of an organism's response to environmental changes. Exercise causes structural changes in muscle and can…”
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Alternative splicing in the differentiation of human embryonic stem cells into cardiac precursors by Salomonis, Nathan, Nelson, Brandon, Vranizan, Karen, Pico, Alexander R, Hanspers, Kristina, Kuchinsky, Allan, Ta, Linda, Mercola, Mark, Conklin, Bruce R

“…The role of alternative splicing in self-renewal, pluripotency and tissue lineage specification of human embryonic stem cells (hESCs) is largely unknown. To…”
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Temporal gene expression profiling during rat femoral marrow ablation-induced intramembranous bone regeneration by Wise, Joel K, Sena, Kotaro, Vranizan, Karen, Pollock, Jacob F, Healy, Kevin E, Hughes, W Frank, Sumner, D Rick, Virdi, Amarjit S

“…Enhanced understanding of differential gene expression and biological pathways associated with distinct phases of intramembranous bone regeneration following…”
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Gene Expression Patterns Define Key Transcriptional Events in Cell-Cycle Regulation by cAMP and Protein Kinase A by Zambon, Alexander C., Zhang, Lingzhi, Minovitsky, Simon, Kanter, Joan R., Prabhakar, Shyam, Salomonis, Nathan, Vranizan, Karen, Dubchak, Inna, Conklin, Bruce R., Insel, Paul A., Taylor, Susan S.

“…Although a substantial number of hormones and drugs increase cellular cAMP levels, the global impact of cAMP and its major effector mechanism, protein kinase A…”
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Gene-trapped mouse embryonic stem cell-derived cardiac myocytes and human genetics implicate AKAP10 in heart rhythm regulation by Tingley, Whittemore G, Pawlikowska, Ludmila, Zaroff, Jonathan G, Kim, Taeryn, Nguyen, Trieu, Young, Stephen G, Vranizan, Karen, Kwok, Pui-Yan, Whooley, Mary A, Conklin, Bruce R

“…Sudden cardiac death due to abnormal heart rhythm kills 400,000-460,000 Americans each year. To identify genes that regulate heart rhythm, we are developing a…”
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Analysis of gene expression during neurite outgrowth and regeneration by Szpara, Moriah L, Vranizan, Karen, Tai, Yu Chuan, Goodman, Corey S, Speed, Terence P, Ngai, John

“…The ability of a neuron to regenerate functional connections after injury is influenced by both its intrinsic state and also by extrinsic cues in its…”
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Transcription factors expressed in olfactory bulb local progenitor cells revealed by genome-wide transcriptome profiling by Campbell, Gordon R.O., Baudhuin, Ariane, Vranizan, Karen, Ngai, John

“…The local progenitor population in the olfactory bulb (OB) gives rise to mitral and tufted projection neurons during embryonic development. In contrast, OB…”
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The Fall and Rise of Carotid Endarterectomy in the United States and Canada by Tu, Jack V, Hannan, Edward L, Anderson, Geoffrey M, Iron, Karey, Wu, Keyi, Vranizan, Karen, Popp, A. John, Grumbach, Kevin

“…Since its introduction in 1954, carotid endarterectomy for the prevention of stroke has been controversial. 1 Rates of carotid endarterectomy rose until the…”
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Conditional Expression of a Gi-Coupled Receptor Causes Ventricular Conduction Delay and a Lethal Cardiomyopathy by Redfern, Charles H., Degtyarev, Michael Y., Kwa, Andrew T., Salomonis, Nathan, Cotte, Nathalie, Nanevicz, Tania, Fidelman, Nick, Desai, Kavin, Vranizan, Karen, Lee, Elena K., Coward, Peter, Shah, Nila, Warrington, Janet A., Fishman, Glenn I., Bernstein, Daniel, Baker, Anthony J., Conklin, Bruce R.

“…Cardiomyopathy is a major cause of morbidity and mortality. Ventricular conduction delay, as shown by prolonged deflections in the electrocardiogram caused by…”
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Gene Expression Signatures of cAMP/Protein Kinase A (PKA)-promoted, Mitochondrial-dependent Apoptosis by Zhang, Lingzhi, Zambon, Alexander C., Vranizan, Karen, Pothula, Kanishka, Conklin, Bruce R., Insel, Paul A.

“…The second messenger cAMP acts via protein kinase A (PKA) to induce apoptosis by mechanisms that are poorly understood. Here, we assessed a role for…”
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Modeling insertional mutagenesis using gene length and expression in murine embryonic stem cells by Nord, Alex S, Vranizan, Karen, Tingley, Whittemore, Zambon, Alexander C, Hanspers, Kristina, Fong, Loren G, Hu, Yan, Bacchetti, Peter, Ferrin, Thomas E, Babbitt, Patricia C, Doniger, Scott W, Skarnes, William C, Young, Stephen G, Conklin, Bruce R

“…High-throughput mutagenesis of the mammalian genome is a powerful means to facilitate analysis of gene function. Gene trapping in embryonic stem cells (ESCs)…”
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Changes in plasma lipids and lipoproteins in overweight men during weight loss through dieting as compared with exercise by Wood, P D, Stefanick, M L, Dreon, D M, Frey-Hewitt, B, Garay, S C, Williams, P T, Superko, H R, Fortmann, S P, Albers, J J, Vranizan, K M

“…We studied separately the influence of two methods for losing fat weight on the levels of plasma lipids and lipoproteins in overweight sedentary…”
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Who uses needle exchange? A study of injection drug users in treatment in San Francisco, 1989-1990 by HAHN, J. A, VRANIZAN, K. M, MOSS, A. R

“…We examined use of the San Francisco needle exchange program (NEP) by 1093 injection drug users (IDUs) recruited in methadone maintenance and out-patient…”
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