Search Results - "VERNèDE, Xavier"
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Structural Insights into the Mechanism of the Radical SAM Carbide Synthase NifB, a Key Nitrogenase Cofactor Maturating Enzyme
Published in Journal of the American Chemical Society (24-06-2020)“…Nitrogenase is a key player in the global nitrogen cycle, as it catalyzes the reduction of dinitrogen into ammonia. The active site of the nitrogenase MoFe…”
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2
Oxygen-Sensitive Metalloprotein Structure Determination by Cryo-Electron Microscopy
Published in Biomolecules (Basel, Switzerland) (12-03-2022)“…Metalloproteins are involved in key cell processes such as photosynthesis, respiration, and oxygen transport. However, the presence of transition metals…”
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3
Advances in spectroscopic methods for biological crystals. 1. Fluorescence lifetime measurements
Published in Journal of applied crystallography (01-12-2007)“…Synchrotrons are now producing thousands of macromolecular structures each year. The need for complementary techniques available on site has progressively…”
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Crystal Structure of the Free Radical Intermediate of Pyruvate: Ferredoxin Oxidoreductase
Published in Science (American Association for the Advancement of Science) (21-12-2001)“…In anaerobic organisms, the decarboxylation of pyruvate, a crucial component of intermediary metabolism, is catalyzed by the metalloenzyme pyruvate: ferredoxin…”
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High-resolution crystallographic analysis of Desulfovibrio fructosovorans [NiFe] hydrogenase
Published in International journal of hydrogen energy (01-11-2002)“…Two 1.8 A ̊ resolution crystal structures of an oxidised form of the [NiFe] hydrogenase of Desulfovibrio ( D.) fructosovorans are reported. The high data…”
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Journal Article Conference Proceeding -
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Methods to Screen for Radical SAM Enzyme Crystallization Conditions
Published in Methods in molecular biology (Clifton, N.J.) (2021)“…Radical S-adenosyl-L-methionine proteins most probably belong to the widest superfamily of metalloenzymes. Thanks to their ability to catalyze difficult…”
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REACH: Robotic Equipment for Automated Crystal Harvesting using a six-axis robot arm and a micro-gripper
Published in Acta crystallographica. Section D, Biological crystallography. (01-03-2013)“…In protein crystallography experiments, only two critical steps remain manual: the transfer of crystals from their original crystallization drop into the…”
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Ni-Zn-[Fe4-S4] and Ni-Ni-[Fe4-S4] clusters in closed and open subunits of acetyl-CoA synthase/carbon monoxide dehydrogenase
Published in Nature structural biology (01-04-2003)“…The crystal structure of the tetrameric alpha2beta2 acetyl-coenzyme A synthase/carbon monoxide dehydrogenase from Moorella thermoacetica has been solved at 1.9…”
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UV laser-excited fluorescence as a tool for the visualization of protein crystals mounted in loops
Published in Acta crystallographica. Section D, Biological crystallography. (01-03-2006)“…Structural proteomics has promoted the rapid development of automated protein structure determination using X‐ray crystallography. Robotics are now routinely…”
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10
Ni-Zn-[Fe 4 -S 4 ] and Ni-Ni-[Fe 4 -S 4 ] clusters in closed and open α subunits of acetyl-CoA synthase/carbon monoxide dehydrogenase
Published in Nature structural biology (01-04-2003)“…The crystal structure of the tetrameric alpha sub(2) beta sub(2) acetylcoenzyme A synthase/carbon monoxide dehydrogenase from Moorella thermoacetica has been…”
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11
Crystallographic and FTIR Spectroscopic Evidence of Changes in Fe Coordination Upon Reduction of the Active Site of the Fe-Only Hydrogenase from Desulfovibrio desulfuricans
Published in Journal of the American Chemical Society (28-02-2001)“…Fe-only hydrogenases, as well as their NiFe counterparts, display unusual intrinsic high-frequency IR bands that have been assigned to CO and CN(-) ligation to…”
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12
A microspectrophotometer for UV-visible absorption and fluorescence studies of protein crystals
Published in Journal of applied crystallography (01-06-2002)“…Absorption microspectrophotometry has been shown to be of considerable help to probe crystalline proteins containing chromophores, metal centres, or coloured…”
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13
Gas access to the active site of Ni-Fe hydrogenases probed by X-ray crystallography and molecular dynamics
Published in Nature structural biology (01-07-1997)“…The 2.54 A resolution structure of Ni-Fe hydrogenase has revealed the existence of hydrophobic channels connecting the molecular surface to the active site. A…”
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14
Crystal structure of Escherichia coli UvrB C-terminal domain, and a model for UvrB-UvrC interaction
Published in FEBS letters (14-01-2000)“…A crystal structure of the C-terminal domain of Escherichia coli UvrB (UvrB′) has been solved to 3.0 Å resolution. The domain adopts a helix-loop-helix fold…”
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Automated robot-based systems for crystallography on beamlines and in laboratories, and other developments performed on FIP-BM30A at the ESRF
Published in Acta crystallographica. Section A, Foundations and advances (20-07-2018)“…Abstract only…”
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A method to stabilize reduced and/or gas-treated protein crystals by flash-cooling under a controlled atmosphere
Published in Journal of applied crystallography (01-06-1999)“…A customized glove box for protein crystallization under a controlled atmosphere is described along with a cryogenic technique adapted to freeze protein…”
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FIP-BM30A at the ESRF: an automated beamline for protein crystallography with unique features
Published in Acta crystallographica. Section A, Foundations and advances (28-08-2016)“…Abstract only…”
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18
Progress of robotized systems for crystallography for beamlines and laboratories
Published in Acta crystallographica. Section A, Foundations and advances (05-08-2014)“…Abstract only Development of 6-axis robotic arm based systems for protein crystallography automation is now expending rapidly. From the seminal work…”
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A geometrical approach for semi-automated crystal centering and in situ X-ray diffraction data collection
Published in Journal of applied crystallography (01-06-2013)“…High‐throughput protein crystallography projects pushed forward the development of automated crystallization platforms that are now commonly used. This created…”
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Journal Article -
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Simultaneous Measurements of Solvent Dynamics and Functional Kinetics in a Light-Activated Enzyme
Published in Biophysical journal (04-03-2009)“…Solvent fluctuations play a key role in controlling protein motions and biological function. Here, we have studied how individual steps of the reaction…”
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