Search Results - "VAULOT, DANIEL"

Green microalgae in marine coastal waters: The Ocean Sampling Day (OSD) dataset by Tragin, Margot, Vaulot, Daniel

“…The ecology and distribution of green phytoplankton (Chlorophyta) in the ocean is poorly known because most studies have focused on groups with large cell size…”
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Novel diversity within marine Mamiellophyceae (Chlorophyta) unveiled by metabarcoding by Tragin, Margot, Vaulot, Daniel

“…Mamiellophyceae (unicellular green algae) are a key phytoplankton group in coastal waters. Although extensively studied over the last 20 years, the overall…”
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pr2‐primers: An 18S rRNA primer database for protists by Vaulot, Daniel, Geisen, Stefan, Mahé, Frédéric, Bass, David

“…Metabarcoding of microbial eukaryotes (collectively known as protists) has developed tremendously in the last decade, almost solely relying on the 18S rRNA…”
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diversity of small eukaryotic phytoplankton (<=3 μm) in marine ecosystems by Vaulot, Daniel, Eikrem, Wenche, Viprey, Manon, Moreau, Hervé

“…Small cells dominate photosynthetic biomass and primary production in many marine ecosystems. Traditionally, picoplankton refers to cells…”
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Marine protist diversity in European coastal waters and sediments as revealed by high-throughput sequencing by Massana, Ramon, Gobet, Angélique, Audic, Stéphane, Bass, David, Bittner, Lucie, Boutte, Christophe, Chambouvet, Aurélie, Christen, Richard, Claverie, Jean-Michel, Decelle, Johan, Dolan, John R., Dunthorn, Micah, Edvardsen, Bente, Forn, Irene, Forster, Dominik, Guillou, Laure, Jaillon, Olivier, Kooistra, Wiebe H. C. F., Logares, Ramiro, Mahé, Frédéric, Not, Fabrice, Ogata, Hiroyuki, Pawlowski, Jan, Pernice, Massimo C., Probert, Ian, Romac, Sarah, Richards, Thomas, Santini, Sébastien, Shalchian-Tabrizi, Kamran, Siano, Raffaele, Simon, Nathalie, Stoeck, Thorsten, Vaulot, Daniel, Zingone, Adriana, de Vargas, Colomban

“…Summary Although protists are critical components of marine ecosystems, they are still poorly characterized. Here we analysed the taxonomic diversity of…”
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Rhythmicity of coastal marine picoeukaryotes, bacteria and archaea despite irregular environmental perturbations by Lambert, Stefan, Tragin, Margot, Lozano, Jean-Claude, Ghiglione, Jean-François, Vaulot, Daniel, Bouget, François-Yves, Galand, Pierre E.

“…Seasonality in marine microorganisms has been classically observed in phytoplankton blooms, and more recently studied at the community level in prokaryotes,…”
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An improved protocol for flow cytometry analysis of phytoplankton cultures and natural samples by Marie, Dominique, Rigaut‐Jalabert, Fabienne, Vaulot, Daniel

“…Preservation of cells, choice of fixative, storage, and thawing conditions are recurrent issues for the analysis of phytoplankton by flow cytometry. We…”
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Structure and seasonal dynamics of the eukaryotic picophytoplankton community in a wind-driven coastal upwelling ecosystem by Collado-Fabbri, Silvana, Vaulot, Daniel, Ulloa, Osvaldo

“…We studied the structure and seasonal dynamics of the photosynthetic picoeukaryote community at a coastal site off central Chile that is strongly affected by…”
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Chimeric viruses blur the borders between the major groups of eukaryotic single-stranded DNA viruses by Roux, Simon, Enault, François, Bronner, Gisèle, Vaulot, Daniel, Forterre, Patrick, Krupovic, Mart

“…Metagenomic studies have uncovered an astonishing diversity of ssDNA viruses encoding replication proteins (Reps) related to those of eukaryotic Circoviridae ,…”
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Diversity and oceanic distribution of prasinophytes clade VII, the dominant group of green algae in oceanic waters by Lopes dos Santos, Adriana, Gourvil, Priscillia, Tragin, Margot, Noël, Mary-Hélène, Decelle, Johan, Romac, Sarah, Vaulot, Daniel

“…Prasinophytes clade VII is a group of pico/nano-planktonic green algae (division Chlorophyta) for which numerous ribosomal RNA (rRNA) sequences have been…”
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High contribution of Rhizaria (Radiolaria) to vertical export in the California Current Ecosystem revealed by DNA metabarcoding by Gutierrez-Rodriguez, Andres, Stukel, Michael R., Lopes dos Santos, Adriana, Biard, Tristan, Scharek, Renate, Vaulot, Daniel, Landry, Michael R., Not, Fabrice

“…Passive sinking of particulate organic matter (POM) is the main mechanism through which the biological pump transports surface primary production to the ocean…”
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Global phylogeography of marine Synechococcus and Prochlorococcus reveals a distinct partitioning of lineages among oceanic biomes by Zwirglmaier, Katrin, Jardillier, Ludwig, Ostrowski, Martin, Mazard, Sophie, Garczarek, Laurence, Vaulot, Daniel, Not, Fabrice, Massana, Ramon, Ulloa, Osvaldo, Scanlan, Dave J

“…Marine cyanobacteria of the genera Prochlorococcus and Synechococcus are important contributors to global primary production occupying a key position at the…”
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dinoref: A curated dinoflagellate (Dinophyceae) reference database for the 18S rRNA gene by Mordret, Solenn, Piredda, Roberta, Vaulot, Daniel, Montresor, Marina, Kooistra, Wiebe H. C. F., Sarno, Diana

“…Dinoflagellates are a heterogeneous group of protists present in all aquatic ecosystems where they occupy various ecological niches. They play a major role as…”
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Groups without cultured representatives dominate eukaryotic picophytoplankton in the oligotrophic South East Pacific Ocean by Shi, Xiao Li, Marie, Dominique, Jardillier, Ludwig, Scanlan, David J, Vaulot, Daniel

“…Photosynthetic picoeukaryotes (PPE) with a cell size less than 3 microm play a critical role in oceanic primary production. In recent years, the composition of…”
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Annual phytoplankton dynamics in coastal waters from Fildes Bay, Western Antarctic Peninsula by Trefault, Nicole, De la Iglesia, Rodrigo, Moreno-Pino, Mario, Lopes dos Santos, Adriana, Gérikas Ribeiro, Catherine, Parada-Pozo, Génesis, Cristi, Antonia, Marie, Dominique, Vaulot, Daniel

“…Year-round reports of phytoplankton dynamics in the West Antarctic Peninsula are rare and mainly limited to microscopy and/or pigment-based studies. We…”
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Diversity and oceanic distribution of the Parmales (Bolidophyceae), a picoplanktonic group closely related to diatoms by Ichinomiya, Mutsuo, dos Santos, Adriana Lopes, Gourvil, Priscillia, Yoshikawa, Shinya, Kamiya, Mitsunobu, Ohki, Kaori, Audic, Stéphane, de Vargas, Colomban, Noël, Mary-Hélène, Vaulot, Daniel, Kuwata, Akira

“…Bolidomonas is a genus of picoplanktonic flagellated algae that is closely related to diatoms. Triparma laevis , a species belonging to the Parmales, which are…”
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The distribution and diversity of eukaryotic phytoplankton in the Icelandic marine environment by Cerfonteyn, Mia, Groben, René, Vaulot, Daniel, Guðmundsson, Kristinn, Vannier, Pauline, Pérez-Hernández, María Dolores, Marteinsson, Viggó Þór

“…Phytoplankton play a crucial role in the marine food web and are sensitive indicators of environmental change. Iceland is at the center of a contrasting…”
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Plastid 16S rRNA gene diversity among eukaryotic picophytoplankton sorted by flow cytometry from the South Pacific Ocean by Shi, Xiao Li, Lepère, Cécile, Scanlan, David J, Vaulot, Daniel

“…The genetic diversity of photosynthetic picoeukaryotes was investigated in the South East Pacific Ocean. Genetic libraries of the plastid 16S rRNA gene were…”
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Pseudo-nitzschia arctica sp. nov., a new cold-water cryptic Pseudo-nitzschia species within the P. pseudodelicatissima complex by Percopo, Isabella, Ruggiero, Maria Valeria, Balzano, Sergio, Gourvil, Priscillia, Lundholm, Nina, Siano, Raffaele, Tammilehto, Anna, Vaulot, Daniel, Sarno, Diana

“…A new nontoxic Pseudo‐nitzschia species belonging to the P. pseudodelicatissima complex, P. arctica, was isolated from different areas of the Arctic. The…”
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Wide genetic diversity of picoplanktonic green algae (Chloroplastida) in the Mediterranean Sea uncovered by a phylum-biased PCR approach by Viprey, Manon, Guillou, Laure, Ferréol, Martial, Vaulot, Daniel

“…The genetic diversity of picoplanktonic (i.e. cells that can pass through a 3 μm pore-size filter) green algae was investigated in the Mediterranean Sea in…”
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