Search Results - "VALLE, GIORGIO"

CUDA compatible GPU cards as efficient hardware accelerators for Smith-Waterman sequence alignment by Manavski, Svetlin A, Valle, Giorgio

“…Searching for similarities in protein and DNA databases has become a routine procedure in Molecular Biology. The Smith-Waterman algorithm has been available…”
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The Accumulation of miRNAs Differentially Modulated by Drought Stress Is Affected by Grafting in Grapevine by Pagliarani, Chiara, Vitali, Marco, Ferrero, Manuela, Vitulo, Nicola, Incarbone, Marco, Lovisolo, Claudio, Valle, Giorgio, Schubert, Andrea

“…Grapevine (Vitis vinifera) is routinely grafted, and rootstocks inducing drought tolerance represent a source for adapting vineyards to climate change in…”
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Light Remodels Lipid Biosynthesis in Nannochloropsis gaditana by Modulating Carbon Partitioning between Organelles by Alboresi, Alessandro, Perin, Giorgio, Vitulo, Nicola, Diretto, Gianfranco, Block, Maryse, Jouhet, Juliette, Meneghesso, Andrea, Valle, Giorgio, Giuliano, Giovanni, Maréchal, Eric, Morosinotto, Tomas

“…The seawater microalga Nannochloropsis gaditana is capable of accumulating a large fraction of reduced carbon as lipids. To clarify the molecular bases of this…”
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A deep survey of alternative splicing in grape reveals changes in the splicing machinery related to tissue, stress condition and genotype by Vitulo, Nicola, Forcato, Claudio, Carpinelli, Elisa Corteggiani, Telatin, Andrea, Campagna, Davide, D'Angelo, Michela, Zimbello, Rosanna, Corso, Massimiliano, Vannozzi, Alessandro, Bonghi, Claudio, Lucchin, Margherita, Valle, Giorgio

“…Alternative splicing (AS) significantly enhances transcriptome complexity. It is differentially regulated in a wide variety of cell types and plays a role in…”
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Mitochondria-rough-ER contacts in the liver regulate systemic lipid homeostasis by Anastasia, Irene, Ilacqua, Nicolò, Raimondi, Andrea, Lemieux, Philippe, Ghandehari-Alavijeh, Rana, Faure, Guilhem, Mekhedov, Sergei L., Williams, Kevin J., Caicci, Federico, Valle, Giorgio, Giacomello, Marta, Quiroga, Ariel D., Lehner, Richard, Miksis, Michael J., Toth, Katalin, de Aguiar Vallim, Thomas Q., Koonin, Eugene V., Scorrano, Luca, Pellegrini, Luca

“…Contacts between organelles create microdomains that play major roles in regulating key intracellular activities and signaling pathways, but whether they also…”
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Comprehensive transcript profiling of two grapevine rootstock genotypes contrasting in drought susceptibility links the phenylpropanoid pathway to enhanced tolerance by Corso, Massimiliano, Vannozzi, Alessandro, Maza, Elie, Vitulo, Nicola, Meggio, Franco, Pitacco, Andrea, Telatin, Andrea, D’Angelo, Michela, Feltrin, Erika, Negri, Alfredo Simone, Prinsi, Bhakti, Valle, Giorgio, Ramina, Angelo, Bouzayen, Mondher, Bonghi, Claudio, Lucchin, Margherita

“…In light of ongoing climate changes in wine-growing regions, the selection of drought-tolerant rootstocks is becoming a crucial factor for developing a…”
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A specific microbiota signature is associated to various degrees of ulcerative colitis as assessed by a machine learning approach by Barberio, Brigida, Facchin, Sonia, Patuzzi, Ilaria, Ford, Alexander C., Massimi, Davide, Valle, Giorgio, Sattin, Eleonora, Simionati, Barbara, Bertazzo, Elena, Zingone, Fabiana, Savarino, Edoardo Vincenzo

“…Ulcerative colitis (UC) is a complex immune-mediated disease in which the gut microbiota plays a central role, and may determine prognosis and disease…”
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Chromosome Scale Genome Assembly and Transcriptome Profiling of Nannochloropsis gaditana in Nitrogen Depletion by Corteggiani Carpinelli, Elisa, Telatin, Andrea, Vitulo, Nicola, Forcato, Claudio, D’Angelo, Michela, Schiavon, Riccardo, Vezzi, Alessandro, Giacometti, Giorgio Mario, Morosinotto, Tomas, Valle, Giorgio

“…Nannochloropsis is rapidly emerging as a model organism for the study of biofuel production in microalgae. Here, we report a high-quality genomic assembly of…”
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SNP-Discovery by RAD-Sequencing in a Germplasm Collection of Wild and Cultivated Grapevines (V. vinifera L.) by Marrano, Annarita, Birolo, Giovanni, Prazzoli, Maria Lucia, Lorenzi, Silvia, Valle, Giorgio, Grando, Maria Stella

“…Whole-genome comparisons of Vitis vinifera subsp. sativa and V. vinifera subsp. sylvestris are expected to provide a better estimate of the valuable genetic…”
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Longitudinal flux balance analyses of a patient with episodic colonic inflammation reveals microbiome metabolic dynamics by Basile, Arianna, Heinken, Almut, Hertel, Johannes, Smarr, Larry, Li, Weizhong, Treu, Laura, Valle, Giorgio, Campanaro, Stefano, Thiele, Ines

“…We report the first use of constraint-based microbial community modeling on a single individual with episodic inflammation of the gastrointestinal tract, who…”
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Biocontrol traits of Bacillus licheniformis GL174, a culturable endophyte of Vitis vinifera cv. Glera by Nigris, Sebastiano, Baldan, Enrico, Tondello, Alessandra, Zanella, Filippo, Vitulo, Nicola, Favaro, Gabriella, Guidolin, Valerio, Bordin, Nicola, Telatin, Andrea, Barizza, Elisabetta, Marcato, Stefania, Zottini, Michela, Squartini, Andrea, Valle, Giorgio, Baldan, Barbara

“…Bacillus licheniformis GL174 is a culturable endophytic strain isolated from Vitis vinifera cultivar Glera, the grapevine mainly cultivated for the Prosecco…”
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Engineering a 3D in vitro model of human skeletal muscle at the single fiber scale by Urciuolo, Anna, Serena, Elena, Ghua, Rusha, Zatti, Susi, Giomo, Monica, Mattei, Nicolò, Vetralla, Massimo, Selmin, Giulia, Luni, Camilla, Vitulo, Nicola, Valle, Giorgio, Vitiello, Libero, Elvassore, Nicola

“…The reproduction of reliable in vitro models of human skeletal muscle is made harder by the intrinsic 3D structural complexity of this tissue. Here we coupled…”
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Large-scale detection and analysis of RNA editing in grape mtDNA by RNA deep-sequencing by Picardi, Ernesto, Horner, David S, Chiara, Matteo, Schiavon, Riccardo, Valle, Giorgio, Pesole, Graziano

“…RNA editing is a widespread post-transcriptional molecular phenomenon that can increase proteomic diversity, by modifying the sequence of completely or…”
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Scuba: scalable kernel-based gene prioritization by Zampieri, Guido, Tran, Dinh Van, Donini, Michele, Navarin, Nicolò, Aiolli, Fabio, Sperduti, Alessandro, Valle, Giorgio

“…The uncovering of genes linked to human diseases is a pressing challenge in molecular biology and precision medicine. This task is often hindered by the large…”
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Microbial activity response to hydrogen injection in thermophilic anaerobic digesters revealed by genome-centric metatranscriptomics by Fontana, Alessandra, Kougias, Panagiotis G, Treu, Laura, Kovalovszki, Adam, Valle, Giorgio, Cappa, Fabrizio, Morelli, Lorenzo, Angelidaki, Irini, Campanaro, Stefano

“…The expansion of renewable energy produced by windmills and photovoltaic panels has generated a considerable electricity surplus, which can be utilized in…”
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Quantitative Proteomic Comparison of Rat Mitochondria from Muscle, Heart, and Liver by Forner, Francesca, Foster, Leonard J., Campanaro, Stefano, Valle, Giorgio, Mann, Matthias

“…Mitochondria, through oxidative phosphorylation, are the primary source of energy production in all tissues under aerobic conditions. Although critical to…”
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MicroRNA signatures in cardiac biopsies and detection of allograft rejection by Di Francesco, Andrea, Fedrigo, Marny, Santovito, Donato, Natarelli, Lucia, Castellani, Chiara, De Pascale, Fabio, Toscano, Giuseppe, Fraiese, Angela, Feltrin, Giuseppe, Benazzi, Elena, Nocco, Angela, Thiene, Gaetano, Valente, Marialuisa, Valle, Giorgio, Schober, Andreas, Gerosa, Gino, Angelini, Annalisa

“…Identification of heart transplant (HTx) rejection currently relies on immunohistology and immunohistochemistry. We aimed to identify specific sets of…”
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Genetic Analyses in Dent Disease and Characterization of CLCN5 Mutations in Kidney Biopsies by Gianesello, Lisa, Ceol, Monica, Bertoldi, Loris, Terrin, Liliana, Priante, Giovanna, Murer, Luisa, Peruzzi, Licia, Giordano, Mario, Paglialonga, Fabio, Cantaluppi, Vincenzo, Musetti, Claudio, Valle, Giorgio, Del Prete, Dorella, Anglani, Franca, Network, Dent Disease Italian

“…Dent disease (DD), an X-linked renal tubulopathy, is mainly caused by loss-of-function mutations in CLCN5 (DD1) and OCRL genes. CLCN5 encodes the ClC-5…”
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Editorial: Identification of phenotypically important genomic variants by Heron, Elizabeth A., Valle, Giorgio, Bernasconi, Anna

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Multilevel comparative bioinformatics to investigate evolutionary relationships and specificities in gene annotations: an example for tomato and grapevine by Ambrosino, Luca, Ruggieri, Valentino, Bostan, Hamed, Miralto, Marco, Vitulo, Nicola, Zouine, Mohamed, Barone, Amalia, Bouzayen, Mondher, Frusciante, Luigi, Pezzotti, Mario, Valle, Giorgio, Chiusano, Maria Luisa

“…"Omics" approaches may provide useful information for a deeper understanding of speciation events, diversification and function innovation. This can be…”
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