Search Results - "V. N. Uppuladinne, Mallikarjunachari"

Natural plant products as potential inhibitors of RNA dependent RNA polymerase of Severe Acute Respiratory Syndrome Coronavirus-2 by Koulgi, Shruti, Jani, Vinod, Uppuladinne V N, Mallikarjunachari, Sonavane, Uddhavesh, Joshi, Rajendra

“…Drug repurposing studies targeting inhibition of RNA dependent RNA polymerase (RdRP) of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) have…”
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Remdesivir-bound and ligand-free simulations reveal the probable mechanism of inhibiting the RNA dependent RNA polymerase of severe acute respiratory syndrome coronavirus 2 by Koulgi, Shruti, Jani, Vinod, Uppuladinne, Mallikarjunachari V. N, Sonavane, Uddhavesh, Joshi, Rajendra

“…The efforts towards developing a potential drug against the current global pandemic, COVID-19, have increased in the past few months. Drug development…”
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A Study Modeling Bridged Nucleic Acid-Based ASOs and Their Impact on the Structure and Stability of ASO/RNA Duplexes by Dowerah, Dikshita, V. N. Uppuladinne, Mallikarjunachari, Paul, Subrata, Das, Dharitri, Gour, Nand K., Biswakarma, Nishant, Sarma, Plaban J., Sonavane, Uddhavesh B., Joshi, Rajendra R., Ray, Suvendra K., Deka, Ramesh Ch

“…Antisense medications treat diseases that cannot be treated using traditional pharmacological technologies. Nucleotide monomers of bare and phosphorothioate…”
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TANGO: A high through‐put conformation generation and semiempirical method‐based optimization tool for ligand molecules by Gavane, Vivek, Koulgi, Shruti, Jani, Vinod, Uppuladinne, Mallikarjunachari V. N., Sonavane, Uddhavesh, Joshi, Rajendra

“…Lead optimization is one of the crucial steps in the drug discovery pipeline. After identifying the lead molecule and obtaining its 2D geometry, understanding…”
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Probing the structure of human tRNA3Lys in the presence of ligands using docking, MD simulations and MSM analysis by Mallikarjunachari V N Uppuladinne, Achalere, Archana, Sonavane, Uddhavesh, Joshi, Rajendra

“…The tRNA3Lys, which acts as a primer for human immunodeficiency virus type 1 (HIV-1) reverse transcription, undergoes structural changes required for the…”
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An insight into the inhibitory mechanism of phytochemicals and FDA-approved drugs on the ACE2–Spike complex of SARS-CoV-2 using computational methods by Jani, Vinod, Koulgi, Shruti, Uppuladinne, V. N. Mallikarjunachari, Sonavane, Uddhavesh, Joshi, Rajendra

“…The S-glycoprotein (Spike) of the SARS-CoV-2 forms a complex with the human transmembrane protein angiotensin-converting enzyme 2 (ACE2) during infection. It…”
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Design of LNA Analogues Using a Combined Density Functional Theory and Molecular Dynamics Approach for RNA Therapeutics by Dowerah, Dikshita, V. N. Uppuladinne, Mallikarjunachari, Sarma, Plaban J., Biswakarma, Nishant, Sonavane, Uddhavesh B., Joshi, Rajendra R., Ray, Suvendra K., Namsa, Nima D., Deka, Ramesh Ch

“…Antisense therapeutics treat a wide spectrum of diseases, many of which cannot be addressed with the current drug technologies. In the quest to design better…”
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Structural insight into the binding interactions of NTPs and nucleotide analogues to RNA dependent RNA polymerase of SARS-CoV-2 by Koulgi, Shruti, Jani, Vinod, V N, Mallikarjunachari Uppuladinne, Sonavane, Uddhavesh, Joshi, Rajendra

“…RNA dependent RNA polymerase (RdRP) from positive-stranded RNA viruses has always been a hot target for designing of new drugs. Major class of drugs that are…”
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Unlocking the potential of RNAi as a therapeutic strategy against infectious viruses: an in-silico study by Uppuladinne, Mallikarjunachari V. N., Koulgi, Shruti, Jani, Vinod, Sonavane, Uddhavesh, Joshi, Rajendra

“…RNA interference is an upcoming methodology being designed to specifically target viral infections. The current study suggests a strategy to design probable…”
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Structural insight into locked nucleic acid based novel antisense modifications: A DFT calculations at monomer and MD simulations at oligomer level by Uppuladinne, Mallikarjunachari V.N., Dowerah, Dikshita, Sonavane, Uddhavesh B., Ray, Suvendra Kumar, Deka, Ramesh C., Joshi, Rajendra R.

“…In the present study, five novel LNA based antisense modifications have been proposed. A conformational search was carried out using TANGO, followed by…”
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Structural insight into antisense gapmer-RNA oligomer duplexes through molecular dynamics simulations by Uppuladinne, Mallikarjunachari V. N., Sonavane, Uddhavesh B., Deka, Ramesh Ch, Joshi, Rajendra R.

“…There is an extensive research carrying out on antisense technology and the molecules entering into clinical trials are increasing rapidly. Phosphorothioate…”
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In-silico evaluation of Oroxylum indicum vent compounds in the plausible treatment and prevention of nasopharyngeal cancer by Thrigulla, Saketh Ram, Singh, Gagandeep, Soni, Hemant, Tandon, Smriti, Koulgi, Shruti, Uppuladinne, Mallikarjunachari V.N., Jani, Vinod, Sonavane, Uddhavesh, Joshi, Rajendra, Gandhi, Yashika, Kumar, Vijay, Charde, Vaibhav, Mishra, Sujeet K., Chincholikar, Mukesh, Narayan, Rakesh, Lavaniya, Vinod, Narasimhaji, Ch Venkata, Srikanth, Narayanam, Acharya, Rabinarayan

“…Shyonaka (Oroxylum indicum Vent) is widely used in Ayurveda and in ethnomedical practice for the treatment of inflammation, pain, diarrhea, non-healing ulcers,…”
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Evaluating therapeutic potential of AYUSH-64 constituents against omicron variant of SARS-CoV-2 using ensemble docking and simulations by Jani, Vinod, Koulgi, Shruti, Uppuladinne, Mallikarjunachari V.N., Thrigulla, Saket Ram, Gundeti, Manohar, Prasad, Goli Penchala, Kumar, Sanjaya, Narayanam, Srikanth, Sonavane, Uddhavesh, Joshi, Rajendra

“…The COVID-19 pandemic in the later phase showed the presence of the B.1.1.529 variant of the SARS-CoV-2 designated as Omicron. AYUSH-64 a poly herbal drug…”
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Auto-regulation of Slug mediates its activity during epithelial to mesenchymal transition by Kumar, Brijesh, Uppuladinne, Mallikarjunachari V.N., Jani, Vinod, Sonavane, Uddhavesh, Joshi, Rajendra R., Bapat, Sharmila A.

“…Slug, a five C2H2 zinc finger (ZF) motif transcription factor mediates cell migration in development, adult tissue repair and regeneration, as well as during…”
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Balchaturbhadra Churna as a potential medicine for SARS-CoV2 infection in pediatric setting: An in silico study by Choudhary, Kuldeep R., Thrigulla, Saketh Ram, Gundeti, Manohar S., Mantena, Pratyusha, Koulgi, Shruti, Jani, Vinod, Uppuladinne, V. N. Mallikarjunachari, Sonavane, Uddhavesh, Joshi, Rajendra, Prasad, Goli Penchala, Reddy, R. Govind, Srikanth, Narayanam

“…AbstractBackground:Balachaturbhadra Churna (BC), Ayurvedic powder dosage form, has four ingredients (Aconitum heterophyllum Wall. Ex Royle, Pistacia…”
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Quantum chemical studies of novel 2′-4′ conformationally restricted antisense monomers by Uppuladinne, Mallikarjunachari V. N., Jani, Vinod, Sonavane, Uddhavesh B., Joshi, Rajendra R.

“…The principle of antisense technologies is based on the specific inhibition of unwanted gene expression by blocking mRNA activity. A rapid increase in the…”
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Structural insights into the interactions of xpt riboswitch with novel guanine analogues: a molecular dynamics simulation study by Jain, Swapan S., Sonavane, Uddhavesh B., Uppuladinne, Mallikarjunachari V.N., McLaughlin, Emily C., Wang, Weiqing, Black, Sheneil, Joshi, Rajendra R.

“…Ligand recognition in purine riboswitches is a complex process requiring different levels of conformational changes. Recent efforts in the area of purine…”
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Probing the structure of human tRNA 3 Lys in the presence of ligands using docking, MD simulations and MSM analysis by Uppuladinne, Mallikarjunachari V. N., Achalere, Archana, Sonavane, Uddhavesh, Joshi, Rajendra

“…The tRNA 3 Lys , which acts as a primer for human immunodeficiency virus type 1 (HIV-1) reverse transcription, undergoes structural changes required for the…”
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Probing the structure of human tRNA in the presence of ligands using docking, MD simulations and MSM analysis by Uppuladinne, Mallikarjunachari V. N, Achalere, Archana, Sonavane, Uddhavesh, Joshi, Rajendra

“…The tRNA 3 Lys , which acts as a primer for human immunodeficiency virus type 1 (HIV-1) reverse transcription, undergoes structural changes required for the…”
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MD simulations of HIV-1 RT primer-template complex: effect of modified nucleosides and antisense PNA oligomer by Uppuladinne, Mallikarjunachari V.N., Sonavane, Uddhavesh B., Joshi, Rajendra R.

“…Human immunodeficiency virus type 1 (HIV-1) requires the human tRNA 3 Lys as a reverse transcriptase (RT) primer. The annealing of 3' terminal 18 nucleotides…”
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