Search Results - "Vågene‬, Åshild J."

A seventeenth-century Mycobacterium tuberculosis genome supports a Neolithic emergence of the Mycobacterium tuberculosis complex by Sabin, Susanna, Herbig, Alexander, Vågene, Åshild J., Ahlström, Torbjörn, Bozovic, Gracijela, Arcini, Caroline, Kühnert, Denise, Bos, Kirsten I.

“…Background Although tuberculosis accounts for the highest mortality from a bacterial infection on a global scale, questions persist regarding its origin. One…”
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A 5700 year-old human genome and oral microbiome from chewed birch pitch by Jensen, Theis Z. T., Niemann, Jonas, Iversen, Katrine Højholt, Fotakis, Anna K., Gopalakrishnan, Shyam, Vågene, Åshild J., Pedersen, Mikkel Winther, Sinding, Mikkel-Holger S., Ellegaard, Martin R., Allentoft, Morten E., Lanigan, Liam T., Taurozzi, Alberto J., Nielsen, Sofie Holtsmark, Dee, Michael W., Mortensen, Martin N., Christensen, Mads C., Sørensen, Søren A., Collins, Matthew J., Gilbert, M. Thomas P., Sikora, Martin, Rasmussen, Simon, Schroeder, Hannes

“…The rise of ancient genomics has revolutionised our understanding of human prehistory but this work depends on the availability of suitable samples. Here we…”
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Geographically dispersed zoonotic tuberculosis in pre-contact South American human populations by Vågene, Åshild J., Honap, Tanvi P., Harkins, Kelly M., Rosenberg, Michael S., Giffin, Karen, Cárdenas-Arroyo, Felipe, Leguizamón, Laura Paloma, Arnett, Judith, Buikstra, Jane E., Herbig, Alexander, Krause, Johannes, Stone, Anne C., Bos, Kirsten I.

“…Previous ancient DNA research has shown that Mycobacterium pinnipedii , which today causes tuberculosis (TB) primarily in pinnipeds, infected human populations…”
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Differential preservation of endogenous human and microbial DNA in dental calculus and dentin by Mann, Allison E., Sabin, Susanna, Ziesemer, Kirsten, Vågene, Åshild J., Schroeder, Hannes, Ozga, Andrew T., Sankaranarayanan, Krithivasan, Hofman, Courtney A., Fellows Yates, James A., Salazar-García, Domingo C., Frohlich, Bruno, Aldenderfer, Mark, Hoogland, Menno, Read, Christopher, Milner, George R., Stone, Anne C., Lewis, Cecil M., Krause, Johannes, Hofman, Corinne, Bos, Kirsten I., Warinner, Christina

“…Dental calculus (calcified dental plaque) is prevalent in archaeological skeletal collections and is a rich source of oral microbiome and host-derived ancient…”
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Multi-omic detection of Mycobacterium leprae in archaeological human dental calculus by Fotakis, Anna K., Denham, Sean D., Mackie, Meaghan, Orbegozo, Miren Iraeta, Mylopotamitaki, Dorothea, Gopalakrishnan, Shyam, Sicheritz-Pontén, Thomas, Olsen, Jesper V., Cappellini, Enrico, Zhang, Guojie, Christophersen, Axel, Gilbert, M. Thomas P., Vågene, Åshild J.

“…Mineralized dental plaque (calculus) has proven to be an excellent source of ancient biomolecules. Here we present a Mycobacterium leprae genome (6.6-fold),…”
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Salmonella enterica genomes from victims of a major sixteenth-century epidemic in Mexico by Vågene, Åshild J., Herbig, Alexander, Campana, Michael G., Robles García, Nelly M., Warinner, Christina, Sabin, Susanna, Spyrou, Maria A., Andrades Valtueña, Aida, Huson, Daniel, Tuross, Noreen, Bos, Kirsten I., Krause, Johannes

“…Indigenous populations of the Americas experienced high mortality rates during the early contact period as a result of infectious diseases, many of which were…”
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Parallel detection of ancient pathogens via array-based DNA capture by Bos, Kirsten I., Jäger, Günter, Schuenemann, Verena J., Vågene, Åshild J., Spyrou, Maria A., Herbig, Alexander, Nieselt, Kay, Krause, Johannes

“…DNA capture coupled with next generation sequencing is highly suitable for the study of ancient pathogens. Screening for pathogens can, however, be meticulous…”
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Population resequencing of European mitochondrial genomes highlights sex-bias in Bronze Age demographic expansions by Batini, Chiara, Hallast, Pille, Vågene, Åshild J., Zadik, Daniel, Eriksen, Heidi A., Pamjav, Horolma, Sajantila, Antti, Wetton, Jon H., Jobling, Mark A.

“…Interpretations of genetic data concerning the prehistory of Europe have long been a subject of great debate, but increasing amounts of ancient and modern DNA…”
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The origin and legacy of the Etruscans through a 2000-year archeogenomic time transect by Posth, Cosimo, Zaro, Valentina, Spyrou, Maria A, Vai, Stefania, Gnecchi-Ruscone, Guido A, Modi, Alessandra, Peltzer, Alexander, Mötsch, Angela, Nägele, Kathrin, Vågene, Åshild J, Nelson, Elizabeth A, Radzevičiūtė, Rita, Freund, Cäcilia, Bondioli, Lorenzo M, Cappuccini, Luca, Frenzel, Hannah, Pacciani, Elsa, Boschin, Francesco, Capecchi, Giulia, Martini, Ivan, Moroni, Adriana, Ricci, Stefano, Sperduti, Alessandra, Turchetti, Maria Angela, Riga, Alessandro, Zavattaro, Monica, Zifferero, Andrea, Heyne, Henrike O, Fernández-Domínguez, Eva, Kroonen, Guus J, McCormick, Michael, Haak, Wolfgang, Lari, Martina, Barbujani, Guido, Bondioli, Luca, Bos, Kirsten I, Caramelli, David, Krause, Johannes

“…The origin, development, and legacy of the enigmatic Etruscan civilization from the central region of the Italian peninsula known as Etruria have been debated…”
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Emergence of human-adapted Salmonella enterica is linked to the Neolithization process by Key, Felix M., Posth, Cosimo, Esquivel-Gomez, Luis R., Hübler, Ron, Spyrou, Maria A., Neumann, Gunnar U., Furtwängler, Anja, Sabin, Susanna, Burri, Marta, Wissgott, Antje, Lankapalli, Aditya Kumar, Vågene, Åshild J., Meyer, Matthias, Nagel, Sarah, Tukhbatova, Rezeda, Khokhlov, Aleksandr, Chizhevsky, Andrey, Hansen, Svend, Belinsky, Andrey B., Kalmykov, Alexey, Kantorovich, Anatoly R., Maslov, Vladimir E., Stockhammer, Philipp W., Vai, Stefania, Zavattaro, Monica, Riga, Alessandro, Caramelli, David, Skeates, Robin, Beckett, Jessica, Gradoli, Maria Giuseppina, Steuri, Noah, Hafner, Albert, Ramstein, Marianne, Siebke, Inga, Lösch, Sandra, Erdal, Yilmaz Selim, Alikhan, Nabil-Fareed, Zhou, Zhemin, Achtman, Mark, Bos, Kirsten, Reinhold, Sabine, Haak, Wolfgang, Kühnert, Denise, Herbig, Alexander, Krause, Johannes

“…It has been hypothesized that the Neolithic transition towards an agricultural and pastoralist economy facilitated the emergence of human-adapted pathogens…”
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Community-curated and standardised metadata of published ancient metagenomic samples with AncientMetagenomeDir by Fellows Yates, James A., Andrades Valtueña, Aida, Vågene, Åshild J., Cribdon, Becky, Velsko, Irina M., Borry, Maxime, Bravo-Lopez, Miriam J., Fernandez-Guerra, Antonio, Green, Eleanor J., Ramachandran, Shreya L., Heintzman, Peter D., Spyrou, Maria A., Hübner, Alexander, Gancz, Abigail S., Hider, Jessica, Allshouse, Aurora F., Zaro, Valentina, Warinner, Christina

“…Ancient DNA and RNA are valuable data sources for a wide range of disciplines. Within the field of ancient metagenomics, the number of published genetic…”
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Ancient Metagenomic Studies: Considerations for the Wider Scientific Community by Der Sarkissian, Clio, Velsko, Irina M, Fotakis, Anna K, Vågene, Åshild J, Hübner, Alexander, Fellows Yates, James A

“…Like modern metagenomics, ancient metagenomics is a highly data-rich discipline, with the added challenge that the DNA of interest is degraded and, depending…”
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Facilitating accessible, rapid, and appropriate processing of ancient metagenomic data with AMDirT [version 2; peer review: 1 approved, 3 approved with reservations] by Borry, Maxime, Forsythe, Adrian, Andrades Valtueña, Aida, Hübner, Alexander, Ibrahim, Anan, Quagliariello, Andrea, White, Anna E., Kocher, Arthur, Vågene‬, Åshild J., Bartholdy, Bjørn Peare, Spurīte, Diāna, Ponce-Soto, Gabriel Yaxal, Neumann, Gunnar, Huang, I-Ting, Light, Ian, Velsko, Irina M., Jackson, Iseult, Frangenberg, Jasmin, Serrano, Javier G., Fumey, Julien, Özdoğan, Kadir T., Blevins, Kelly E., Daly, Kevin G., Lopopolo, Maria, Moraitou, Markella, Michel, Megan, van Os, Meriam, Bravo-Lopez, Miriam J., Sarhan, Mohamed S., Dagtas, Nihan D., Oskolkov, Nikolay, Smith, Olivia S., Lebrasseur, Ophélie, Rozwalak, Piotr, Eisenhofer, Raphael, Wasef, Sally, Ramachandran, Shreya L., Vanghi, Valentina, Warinner, Christina, Fellows Yates, James A.

“…Background Access to sample-level metadata is important when selecting public metagenomic sequencing datasets for reuse in new biological analyses. The…”
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Facilitating accessible, rapid, and appropriate processing of ancient metagenomic data with AMDirT [version 1; peer review: 1 approved, 1 approved with reservations] by Borry, Maxime, Forsythe, Adrian, Andrades Valtueña, Aida, Hübner, Alexander, Ibrahim, Anan, Quagliariello, Andrea, White, Anna E., Kocher, Arthur, Vågene‬, Åshild J., Bartholdy, Bjørn Peare, Spurīte, Diāna, Ponce-Soto, Gabriel Yaxal, Neumann, Gunnar, Huang, I-Ting, Light, Ian, Velsko, Irina M., Jackson, Iseult, Frangenberg, Jasmin, Serrano, Javier G., Fumey, Julien, Özdoğan, Kadir T., Blevins, Kelly E., Daly, Kevin G., Lopopolo, Maria, Moraitou, Markella, Michel, Megan, van Os, Meriam, Bravo-Lopez, Miriam J., Sarhan, Mohamed S., Dagtas, Nihan D., Oskolkov, Nikolay, Smith, Olivia S., Lebrasseur, Ophélie, Rozwalak, Piotr, Eisenhofer, Raphael, Wasef, Sally, Ramachandran, Shreya L., Vanghi, Valentina, Warinner, Christina, Fellows Yates, James A.

“…Background: Access to sample-level metadata is important when selecting public metagenomic sequencing datasets for reuse in new biological analyses. The…”
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The Anglo-Saxon migration and the formation of the early English gene pool by Gretzinger, Joscha, Sayer, Duncan, Justeau, Pierre, Altena, Eveline, Pala, Maria, Dulias, Katharina, Edwards, Ceiridwen J., Jodoin, Susanne, Lacher, Laura, Sabin, Susanna, Vågene, Åshild J., Haak, Wolfgang, Ebenesersdóttir, S. Sunna, Moore, Kristjan H. S., Radzeviciute, Rita, Schmidt, Kara, Brace, Selina, Bager, Martina Abenhus, Patterson, Nick, Papac, Luka, Broomandkhoshbacht, Nasreen, Callan, Kimberly, Harney, Éadaoin, Iliev, Lora, Lawson, Ann Marie, Michel, Megan, Stewardson, Kristin, Zalzala, Fatma, Rohland, Nadin, Kappelhoff-Beckmann, Stefanie, Both, Frank, Winger, Daniel, Neumann, Daniel, Saalow, Lars, Krabath, Stefan, Beckett, Sophie, Van Twest, Melanie, Faulkner, Neil, Read, Chris, Barton, Tabatha, Caruth, Joanna, Hines, John, Krause-Kyora, Ben, Warnke, Ursula, Schuenemann, Verena J., Barnes, Ian, Dahlström, Hanna, Clausen, Jane Jark, Richardson, Andrew, Popescu, Elizabeth, Dodwell, Natasha, Ladd, Stuart, Phillips, Tom, Mortimer, Richard, Sayer, Faye, Swales, Diana, Stewart, Allison, Powlesland, Dominic, Kenyon, Robert, Ladle, Lilian, Peek, Christina, Grefen-Peters, Silke, Ponce, Paola, Daniels, Robin, Spall, Cecily, Woolcock, Jennifer, Jones, Andy M., Roberts, Amy V., Symmons, Robert, Rawden, Anooshka C., Cooper, Alan, Bos, Kirsten I., Booth, Tom, Schroeder, Hannes, Thomas, Mark G., Helgason, Agnar, Richards, Martin B., Reich, David, Krause, Johannes, Schiffels, Stephan

“…The history of the British Isles and Ireland is characterized by multiple periods of major cultural change, including the influential transformation after the…”
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Corroborating written history with ancient DNA: The case of the Well-man described in an Old Norse saga by Ellegaard, Martin R., Ebenesersdóttir, S. Sunna, Moore, Kristjan H.S., Petersén, Anna, Vågene, Åshild J., Bieker, Vanessa C., Denham, Sean D., Cavalleri, Gianpiero L., Gilbert, Edmund, Werge, Thomas, Hansen, Thomas F., Kockum, Ingrid, Alfredsson, Lars, Olsson, Tomas, Hovig, Eivind, Gilbert, M. Thomas P., Stefánsson, Kári, Stenøien, Hans K., Helgason, Agnar, Martin, Michael D.

“…The potential of ancient DNA analyses to provide independent sources of information about events in the historical record remains to be demonstrated. Here we…”
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Parallel detection of ancient pathogens via array-based DNA capture by Bos, Kirsten I., Jäger, Günter, Schuenemann, Verena J., Vågene, Åshild J., Spyrou, Maria A., Herbig, Alexander, Nieselt, Kay, Krause, Johannes

“…DNA capture coupled with next generation sequencing is highly suitable for the study of ancient pathogens. Screening for pathogens can, however, be meticulous…”
Get full text