Search Results - "Uyenoyama, Marcy K."

Ancestral Population Genomics: The Coalescent Hidden Markov Model Approach by Dutheil, Julien Y, Ganapathy, Ganesh, Hobolth, Asger, Mailund, Thomas, Uyenoyama, Marcy K, Schierup, Mikkel H

“…With incomplete lineage sorting (ILS), the genealogy of closely related species differs along their genomes. The amount of ILS depends on population parameters…”
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Wright's Hierarchical F-Statistics by Uyenoyama, Marcy K

“…This perspective article offers a meditation on FST and other quantities developed by Sewall Wright to describe the population structure, defined as any…”
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Joint identity among loci under mutation and regular inbreeding by Uyenoyama, Marcy K.

“…This study describes a compact method for determining joint probabilities of identity-by-state (IBS) within and between loci in populations evolving under…”
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Evolution under tight linkage to mating type by Uyenoyama, Marcy K.

“…Recent large-scale sequencing studies of mating type loci in a number of organisms offer insight into the origin and evolution of these genomic regions…”
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Effects of polymorphism for locally adapted genes on rates of neutral introgression in structured populations by Fusco, Diana, Uyenoyama, Marcy K.

“…Adaptation to local conditions within demes balanced by migration can maintain polymorphisms for variants that reduce fitness in certain ecological contexts…”
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Allele frequency spectra in structured populations: Novel-allele probabilities under the labelled coalescent by Uyenoyama, Marcy K., Takebayashi, Naoki, Kumagai, Seiji

“…We address the effect of population structure on key properties of the Ewens sampling formula. We use our previously-introduced inductive method for…”
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Inductive determination of allele frequency spectrum probabilities in structured populations by Uyenoyama, Marcy K., Takebayashi, Naoki, Kumagai, Seiji

“…We present a method for inductively determining exact allele frequency spectrum (AFS) probabilities for samples derived from a population comprising two demes…”
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Evolution of the sex ratio and effective number under gynodioecy and androdioecy by Uyenoyama, Marcy K., Takebayashi, Naoki

“…We address the evolution of effective number of individuals under androdioecy and gynodioecy. We analyze dynamic models of autosomal modifiers of weak effect…”
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The evolutionary forest algorithm by Leman, Scotland C., Uyenoyama, Marcy K., Lavine, Michael, Chen, Yuguo

“…Motivation: Gene genealogies offer a powerful context for inferences about the evolutionary process based on presently segregating DNA variation. In many…”
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The Evolution of Population Biology by Singh, Rama S, Uyenoyama, Marcy K

“…This 2004 collection of essays deals with the foundation and historical development of population biology and its relationship to population genetics and…”
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Genealogical Structure Among Alleles Regulating Self-Incompatibility in Natural Populations of Flowering Plants by Uyenoyama, M. K

“…A method is proposed for characterizing the structure of genealogies among alleles that regulate self-incompatibility in flowering plants. Expected…”
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Genealogical histories in structured populations by Kumagai, Seiji, Uyenoyama, Marcy K.

“…In genealogies of genes sampled from structured populations, lineages coalesce at rates dependent on the states of the lineages. For migration and coalescence…”
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Allelic diversity and gene genealogy at the self-incompatibility locus in the Solanaceae by Richman, A.D. (University of California at San Diego, La Jolla, CA.), Uyenoyama, M.K, Kohn, J.R

“…The self-incompatibility (S) locus of flowering plants offers an example of extreme polymorphism maintained by balancing selection. Estimates of recent and…”
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Editor's Report for Volume 28 (2011) by Uyenoyama, Marcy K

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Sex-specific incompatibility generates locus-specific rates of introgression between species by Fusco, Diana, Uyenoyama, Marcy K

“…Disruption of interactions among ensembles of epistatic loci has been shown to contribute to reproductive isolation among various animal and plant species…”
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Evolutionary Dynamics of Dual-Specificity Self-Incompatibility Alleles by Uyenoyama, Marcy K., Newbigin, Ed

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A Bayesian Approach to Inferring Rates of Selfing and Locus-Specific Mutation by Redelings, Benjamin D, Kumagai, Seiji, Tatarenkov, Andrey, Wang, Liuyang, Sakai, Ann K, Weller, Stephen G, Culley, Theresa M, Avise, John C, Uyenoyama, Marcy K

“…We present a Bayesian method for characterizing the mating system of populations reproducing through a mixture of self-fertilization and random outcrossing…”
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Editor's Report for 2008 by Uyenoyama, Marcy K.

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Importance sampling for the infinite sites model by Hobolth, Asger, Uyenoyama, Marcy K, Wiuf, Carsten

“…Importance sampling or Markov Chain Monte Carlo sampling is required for state-of-the-art statistical analysis of population genetics data. The applicability…”
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ON THE EVOLUTIONARY COSTS OF SELF-INCOMPATIBILITY: INCOMPLETE REPRODUCTIVE COMPENSATION DUE TO POLLEN LIMITATION by Vallejo-Marín, Mario, Uyenoyama, Marcy K

“…Pollen limitation affects plants with diverse reproductive systems and ecologies. In self-incompatible (SI) species, pollen limitation may preclude full…”
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