Search Results - "Uddin, Mostofa Rafid"

Self-supervised learning for macromolecular structure classification based on cryo-electron tomograms by Gupta, Tarun, He, Xuehai, Uddin, Mostofa Rafid, Zeng, Xiangrui, Zhou, Andrew, Zhang, Jing, Freyberg, Zachary, Xu, Min

“…Macromolecular structure classification from cryo-electron tomography (cryo-ET) data is important for understanding macro-molecular dynamics. It has a wide…”
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Detecting anomalies from liquid transfer videos in automated laboratory setting by Sarker, Najibul Haque, Hakim, Zaber Abdul, Dabouei, Ali, Uddin, Mostofa Rafid, Freyberg, Zachary, MacWilliams, Andy, Kangas, Joshua, Xu, Min

“…In this work, we address the problem of detecting anomalies in a certain laboratory automation setting. At first, we collect video images of liquid transfer in…”
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Harmony: A Generic Unsupervised Approach for Disentangling Semantic Content from Parameterized Transformations by Uddin, Mostofa Rafid, Howe, Gregory, Zeng, Xiangrui, Xu, Min

“…In many real-life image analysis applications, particularly in biomedical research domains, the objects of interest undergo multiple transformations that…”
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SAINT: self-attention augmented inception-inside-inception network improves protein secondary structure prediction by Uddin, Mostofa Rafid, Mahbub, Sazan, Rahman, M Saifur, Bayzid, Md Shamsuzzoha

“…Abstract Motivation Protein structures provide basic insight into how they can interact with other proteins, their functions and biological roles in an…”
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Computational Methods Toward Unbiased Pattern Mining and Structure Determination in Cryo-Electron Tomography Data by Kim, Hannah Hyun-Sook, Uddin, Mostofa Rafid, Xu, Min, Chang, Yi-Wei

“…[Display omitted] •Cryo-ET reveals intracellular structures in situ and can form visual atlases to map the molecular sociology of a cell.•Analysis software…”
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Cryo-shift: reducing domain shift in cryo-electron subtomograms with unsupervised domain adaptation and randomization by Bandyopadhyay, Hmrishav, Deng, Zihao, Ding, Leiting, Liu, Sinuo, Uddin, Mostofa Rafid, Zeng, Xiangrui, Behpour, Sima, Xu, Min

“…Abstract Motivation Cryo-Electron Tomography (cryo-ET) is a 3D imaging technology that enables the visualization of subcellular structures in situ at…”
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Deep Active Learning for Cryo-Electron Tomography Classification by Wang, Tianyang, Li, Bo, Zhang, Jing, Zeng, Xiangrui, Uddin, Mostofa Rafid, Wu, Wei, Xu, Min

“…Cryo-Electron Tomography (cryo-ET) is an emerging 3D imaging technique which shows great potentials in structural biology research. One of the main challenges…”
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Structure Detection in Three-Dimensional Cellular Cryoelectron Tomograms by Reconstructing Two-Dimensional Annotated Tilt Series by Zeng, Xiangrui, Lin, Ziqian, Uddin, Mostofa Rafid, Zhou, Bo, Cheng, Chao, Zhang, Jing, Freyberg, Zachary, Xu, Min

“…The revolutionary technique cryoelectron tomography (cryo-ET) enables imaging of cellular structure and organization in a near-native environment at…”
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Unsupervised Multi-Task Learning for 3D Subtomogram Image Alignment, Clustering and Segmentation by Zhu, Haoyi, Wang, Chuting, Wang, Yuanxin, Fan, Zhaoxin, Uddin, Mostofa Rafid, Gao, Xin, Zhang, Jing, Zeng, Xiangrui, Xu, Min

“…3D subtomogram image alignment, clustering, and segmentation are vital to macromolecular structure recognition in cryo-electron tomography (cryo-ET). However,…”
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Practical Analysis of Macromolecule Identity from Cryo-electron Tomography Images using Deep Learning by Uddin, Mostofa Rafid, Ahmed, Ajmain Yasar, Khan, Kafi, Fatemi, Md Shahrar, Zeng, Xiangrui, Xu, Min

“…Cellular electron cryo-tomography (cryo-ET) has made possible the systematic 3D visualization of the near-native structures and spatial-organizations of large…”
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Immune landscape in invasive ductal and lobular breast cancer reveals a divergent macrophage-driven microenvironment by Onkar, Sayali, Cui, Jian, Zou, Jian, Cardello, Carly, Cillo, Anthony R, Uddin, Mostofa Rafid, Sagan, April, Joy, Marion, Osmanbeyoglu, Hatice U, Pogue-Geile, Katherine L, McAuliffe, Priscilla F, Lucas, Peter C, Tseng, George C, Lee, Adrian V, Bruno, Tullia C, Oesterreich, Steffi, Vignali, Dario A A

“…T cell-centric immunotherapies have shown modest clinical benefit thus far for estrogen receptor-positive (ER ) breast cancer. Despite accounting for 70% of…”
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DualContrast: Unsupervised Disentangling of Content and Transformations with Implicit Parameterization by Uddin, Mostofa Rafid, Xu, Min

“…Unsupervised disentanglement of content and transformation has recently drawn much research, given their efficacy in solving downstream unsupervised tasks like…”
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Immune landscape in estrogen receptor positive breast cancer reveals a divergent macrophage-driven microenvironment by Onkar, Sayali, Cui, Jian, Zou, Jian, Cardello, Carly, Cillo, Anthony R, Uddin, Mostofa Rafid, Sagan, April, Joy, Marion, Osmanbeyoglu, Hatice U, Pogue-Geile, Katherine, McAuliffe, Priscilla F., Lucas, Peter C., Tseng, George C., Lee, Adrian V, Bruno, Tullia C, Oesterreich, Steffi, Vignali, Dario A.A.

“…T-cell centric immunotherapies have shown modest clinical benefit thus far for estrogen receptor positive (ER+) breast cancer, which account for 70% of all…”
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Publisher Correction: Immune landscape in invasive ductal and lobular breast cancer reveals a divergent macrophage-driven microenvironment by Onkar, Sayali, Cui, Jian, Zou, Jian, Cardello, Carly, Cillo, Anthony R, Uddin, Mostofa Rafid, Sagan, April, Joy, Marion, Osmanbeyoglu, Hatice U, Pogue-Geile, Katherine L, McAuliffe, Priscilla F, Lucas, Peter C, Tseng, George C, Lee, Adrian V, Bruno, Tullia C, Oesterreich, Steffi, Vignali, Dario A A

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Improving Knowledge Distillation in Transfer Learning with Layer-wise Learning Rates by Kokane, Shirley, Uddin, Mostofa Rafid, Xu, Min

“…Transfer learning methods start performing poorly when the complexity of the learning task is increased. Most of these methods calculate the cumulative…”
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Cryo-shift: Reducing domain shift in cryo-electron subtomograms with unsupervised domain adaptation and randomization by Bandyopadhyay, Hmrishav, Deng, Zihao, Ding, Leiting, Liu, Sinuo, Uddin, Mostofa Rafid, Zeng, Xiangrui, Behpour, Sima, Xu, Min

“…Bioinformatics 2021 Cryo-Electron Tomography (cryo-ET) is a 3D imaging technology that enables the visualization of subcellular structures in situ at…”
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