Search Results - "Udall, Joshua A"

Widespread natural variation of DNA methylation within angiosperms by Niederhuth, Chad E, Bewick, Adam J, Ji, Lexiang, Alabady, Magdy S, Kim, Kyung Do, Li, Qing, Rohr, Nicholas A, Rambani, Aditi, Burke, John M, Udall, Joshua A, Egesi, Chiedozie, Schmutz, Jeremy, Grimwood, Jane, Jackson, Scott A, Springer, Nathan M, Schmitz, Robert J

“…DNA methylation is an important feature of plant epigenomes, involved in the formation of heterochromatin and affecting gene expression. Extensive variation of…”
Get full text

De Novo Genome Sequence Assemblies of Gossypium raimondii and Gossypium turneri by Udall, Joshua A, Long, Evan, Hanson, Chris, Yuan, Daojun, Ramaraj, Thiruvarangan, Conover, Justin L, Gong, Lei, Arick, Mark A, Grover, Corrinne E, Peterson, Daniel G, Wendel, Jonathan F

“…Cotton is an agriculturally important crop. Because of its importance, a genome sequence of a diploid cotton species ( , D-genome) was first assembled using…”
Get full text

Genomic expression dominance in allopolyploids by Rapp, Ryan A, Udall, Joshua A, Wendel, Jonathan F

“…Allopolyploid speciation requires rapid evolutionary reconciliation of two diverged genomes and gene regulatory networks. Here we describe global patterns of…”
Get full text

Genomic Structural Variations Within Five Continental Populations of Drosophila melanogaster by Long, Evan, Evans, Carrie, Chaston, John, Udall, Joshua A

“…Chromosomal structural variations (SV) including insertions, deletions, inversions, and translocations occur within the genome and can have a significant…”
Get full text

Polyploidy and Crop Improvement by Udall, Joshua A., Wendel, Jonathan F.

“…All crop plants are polyploid and some genomes have been duplicated more recently than others. Advancements in cytogenetic and molecular tools, including…”
Get full text

Parallel and Intertwining Threads of Domestication in Allopolyploid Cotton by Yuan, Daojun, Grover, Corrinne E., Hu, Guanjing, Pan, Mengqiao, Miller, Emma R., Conover, Justin L., Hunt, Spencer P., Udall, Joshua A., Wendel, Jonathan F.

“…The two cultivated allopolyploid cottons, Gossypium hirsutum and Gossypium barbadense, represent a remarkable example of parallel independent domestication,…”
Get full text

Reciprocal silencing, transcriptional bias and functional divergence of homeologs in polyploid cotton (Gossypium) by Chaudhary, Bhupendra, Flagel, Lex, Stupar, Robert M, Udall, Joshua A, Verma, Neetu, Springer, Nathan M, Wendel, Jonathan F

“…Polyploidy is an important force in the evolution of flowering plants. Genomic merger and doubling induce an extensive array of genomic effects, including…”
Get full text

Duplicate gene evolution, homoeologous recombination, and transcriptome characterization in allopolyploid cotton by Flagel, Lex E, Wendel, Jonathan F, Udall, Joshua A

“…Modern allotetraploid cotton contains an "A" and "D" genome from an ancestral polyploidy event that occurred approximately 1-2 million years ago. Diploid A-…”
Get full text

Origin and diversity of the wild cottons (Gossypium hirsutum) of Mound Key, Florida by Ning, Weixuan, Rogers, Karen M., Hsu, Chuan-Yu, Magbanua, Zenaida V., Pechanova, Olga, Arick, Mark A., Kayal, Ehsan, Hu, Guanjing, Peterson, Daniel G., Udall, Joshua A., Grover, Corrinne E., Wendel, Jonathan F.

“…Elucidating genetic diversity within wild forms of modern crops is essential for understanding domestication and the possibilities of wild germplasm…”
Get full text

The Genome Sequence of Gossypioides kirkii Illustrates a Descending Dysploidy in Plants by Udall, Joshua A, Long, Evan, Ramaraj, Thiruvarangan, Conover, Justin L, Yuan, Daojun, Grover, Corrinne E, Gong, Lei, Arick, 2nd, Mark A, Masonbrink, Rick E, Peterson, Daniel G, Wendel, Jonathan F

“…One of the extraordinary aspects of plant genome evolution is variation in chromosome number, particularly that among closely related species. This is…”
Get full text

Partitioned expression of duplicated genes during development and evolution of a single cell in a polyploid plant by Hovav, Ran, Udall, Joshua A, Chaudhary, Bhupendra, Rapp, Ryan, Flagel, Lex, Wendel, Jonathan F

“…Polyploidy is an important driver of eukaryotic evolution, evident in many animals, fungi, and plants. One consequence of polyploidy is subfunctionalization,…”
Get full text

Homology-based identification of candidate genes for male sterility editing in upland cotton ( Gossypium hirsutum L.) by Morales, Karina Y, Bridgeland, Aya H, Hake, Kater D, Udall, Joshua A, Thomson, Michael J, Yu, John Z

“…Upland cotton ( L.) accounts for more than 90% of the world's cotton production, providing natural material for the textile and oilseed industries worldwide…”
Get full text

PolyCat: a resource for genome categorization of sequencing reads from allopolyploid organisms by Page, Justin T, Gingle, Alan R, Udall, Joshua A

“…Read mapping is a fundamental part of next-generation genomic research but is complicated by genome duplication in many plants. Categorizing DNA sequence reads…”
Get full text

The Gossypium longicalyx Genome as a Resource for Cotton Breeding and Evolution by Grover, Corrinne E, Pan, Mengqiao, Yuan, Daojun, Arick, Mark A, Hu, Guanjing, Brase, Logan, Stelly, David M, Lu, Zefu, Schmitz, Robert J, Peterson, Daniel G, Wendel, Jonathan F, Udall, Joshua A

“…Cotton is an important crop that has made significant gains in production over the last century. Emerging pests such as the reniform nematode have threatened…”
Get full text

Detection of Chromosomal Rearrangements Derived From Homeologous Recombination in Four Mapping Populations of Brassica napus L by Udall, Joshua A, Quijada, Pablo A, Osborn, Thomas C

“…Abstract Genetic maps of Brassica napus were constructed from four segregating populations of doubled haploid lines. Each mapping population had the same male…”
Get full text

The Gossypium anomalum genome as a resource for cotton improvement and evolutionary analysis of hybrid incompatibility by Grover, Corrinne E, Yuan, Daojun, Arick, Mark A, Miller, Emma R, Hu, Guanjing, Peterson, Daniel G, Wendel, Jonathan F, Udall, Joshua A

“…Cotton is an important crop that has been the beneficiary of multiple genome sequencing efforts, including diverse representatives of wild species for…”
Get full text

RNA-Seq Transcriptome Profiling of Upland Cotton (Gossypium hirsutum L.) Root Tissue under Water-Deficit Stress by Bowman, Megan J, Park, Wonkeun, Bauer, Philip J, Udall, Joshua A, Page, Justin T, Raney, Joshua, Scheffler, Brian E, Jones, Don. C, Campbell, B. Todd, Zhang, Jinfa

“…An RNA-Seq experiment was performed using field grown well-watered and naturally rain fed cotton plants to identify differentially expressed transcripts under…”
Get full text

Genome assembly of two nematode-resistant cotton lines (Gossypium hirsutum L.) by Perkin, Lindsey C, Bell, Al, Hinze, Lori L, Suh, Charles P-C, Arick, Mark A, Peterson, Daniel G, Udall, Joshua A

“…Upland cotton (Gossypium hirsutum L.) is susceptible to damage by the root-knot and the reniform nematodes, causing yield losses greater than 4% annually in…”
Get full text

Transcriptome characterization and polymorphism detection between subspecies of big sagebrush (Artemisia tridentata) by Bajgain, Prabin, Richardson, Bryce A, Price, Jared C, Cronn, Richard C, Udall, Joshua A

“…Big sagebrush (Artemisia tridentata) is one of the most widely distributed and ecologically important shrub species in western North America. This species…”
Get full text

Quantitative trait analysis of seed yield and other complex traits in hybrid spring rapeseed (Brassica napus L.) 1. Identification of genomic regions from winter germplasm by QUIJADA, Pablo A, UDALL, Joshua A, LAMBERT, Bart, OSBORN, Thomas C

“…The introgression of winter germplasm into spring canola (Brassica napus L.) represents a novel approach to improve seed yield of hybrid spring canola. In this…”
Get full text