Search Results - "Tsujii, Jun’ichi"

Corpus annotation for mining biomedical events from literature by Kim, Jin-Dong, Ohta, Tomoko, Tsujii, Jun'ichi

“…Advanced Text Mining (TM) such as semantic enrichment of papers, event or relation extraction, and intelligent Question Answering have increasingly attracted…”
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Discovering and visualizing indirect associations between biomedical concepts by Tsuruoka, Yoshimasa, Miwa, Makoto, Hamamoto, Kaisei, Tsujii, Jun'ichi, Ananiadou, Sophia

“…Motivation: Discovering useful associations between biomedical concepts has been one of the main goals in biomedical text-mining, and understanding their…”
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Event extraction across multiple levels of biological organization by Pyysalo, Sampo, Ohta, Tomoko, Miwa, Makoto, Cho, Han-Cheol, Tsujii, Jun'ichi, Ananiadou, Sophia

“…Event extraction using expressive structured representations has been a significant focus of recent efforts in biomedical information extraction. However,…”
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Complex event extraction at PubMed scale by Björne, Jari, Ginter, Filip, Pyysalo, Sampo, Tsujii, Jun'ichi, Salakoski, Tapio

“…Motivation: There has recently been a notable shift in biomedical information extraction (IE) from relation models toward the more expressive event model,…”
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The Genia Event and Protein Coreference tasks of the BioNLP Shared Task 2011 by Kim, Jin-Dong, Nguyen, Ngan, Wang, Yue, Tsujii, Jun'ichi, Takagi, Toshihisa, Yonezawa, Akinori

“…The Genia task, when it was introduced in 2009, was the first community-wide effort to address a fine-grained, structural information extraction from…”
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Overview of the ID, EPI and REL tasks of BioNLP Shared Task 2011 by Pyysalo, Sampo, Ohta, Tomoko, Rak, Rafal, Sullivan, Dan, Mao, Chunhong, Wang, Chunxia, Sobral, Bruno, Tsujii, Jun'ichi, Ananiadou, Sophia

“…We present the preparation, resources, results and analysis of three tasks of the BioNLP Shared Task 2011: the main tasks on Infectious Diseases (ID) and…”
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Building a high-quality sense inventory for improved abbreviation disambiguation by Okazaki, Naoaki, Ananiadou, Sophia, Tsujii, Jun'ichi

“…Motivation: The ultimate goal of abbreviation management is to disambiguate every occurrence of an abbreviation into its expanded form (concept or sense). To…”
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Natural Language Processing and Computational Linguistics by Tsujii, Junichi

“…Research on natural language processing (NLP) is much more constrained by currently available resources and technologies, compared with theoretical work on…”
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PathText: a text mining integrator for biological pathway visualizations by Kemper, Brian, Matsuzaki, Takuya, Matsuoka, Yukiko, Tsuruoka, Yoshimasa, Kitano, Hiroaki, Ananiadou, Sophia, Tsujii, Jun'ichi

“…Motivation: Metabolic and signaling pathways are an increasingly important part of organizing knowledge in systems biology. They serve to integrate collective…”
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New challenges for text mining: mapping between text and manually curated pathways by Oda, Kanae, Kim, Jin-Dong, Ohta, Tomoko, Okanohara, Daisuke, Matsuzaki, Takuya, Tateisi, Yuka, Tsujii, Jun'ichi

“…Associating literature with pathways poses new challenges to the Text Mining (TM) community. There are three main challenges to this task: (1) the…”
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FACTA: a text search engine for finding associated biomedical concepts by Tsuruoka, Yoshimasa, Tsujii, Jun'ichi, Ananiadou, Sophia

“…FACTA is a text search engine for MEDLINE abstracts, which is designed particularly to help users browse biomedical concepts (e.g. genes/proteins, diseases,…”
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Event extraction for systems biology by text mining the literature by Ananiadou, Sophia, Pyysalo, Sampo, Tsujii, Jun’ichi, Kell, Douglas B

“…Systems biology recognizes in particular the importance of interactions between biological components and the consequences of these interactions. Such…”
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Improving clinical named entity recognition in Chinese using the graphical and phonetic feature by Wang, Yifei, Ananiadou, Sophia, Tsujii, Jun'ichi

“…Clinical Named Entity Recognition is to find the name of diseases, body parts and other related terms from the given text. Because Chinese language is quite…”
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Evaluating contributions of natural language parsers to protein–protein interaction extraction by Miyao, Yusuke, Sagae, Kenji, Sætre, Rune, Matsuzaki, Takuya, Tsujii, Jun'ichi

“…Motivation: While text mining technologies for biomedical research have gained popularity as a way to take advantage of the explosive growth of information in…”
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Protein–protein interaction extraction by leveraging multiple kernels and parsers by Miwa, Makoto, Sætre, Rune, Miyao, Yusuke, Tsujii, Jun’ichi

“…Abstract Protein–protein interaction (PPI) extraction is an important and widely researched task in the biomedical natural language processing (BioNLP) field…”
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U-Compare bio-event meta-service: compatible BioNLP event extraction services by Kano, Yoshinobu, Björne, Jari, Ginter, Filip, Salakoski, Tapio, Buyko, Ekaterina, Hahn, Udo, Cohen, K Bretonnel, Verspoor, Karin, Roeder, Christophe, Hunter, Lawrence E, Kilicoglu, Halil, Bergler, Sabine, Van Landeghem, Sofie, Van Parys, Thomas, Van de Peer, Yves, Miwa, Makoto, Ananiadou, Sophia, Neves, Mariana, Pascual-Montano, Alberto, Özgür, Arzucan, Radev, Dragomir R, Riedel, Sebastian, Sætre, Rune, Chun, Hong-Woo, Kim, Jin-Dong, Pyysalo, Sampo, Ohta, Tomoko, Tsujii, Jun'ichi

“…Bio-molecular event extraction from literature is recognized as an important task of bio text mining and, as such, many relevant systems have been developed…”
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Annotation and detection of drug effects in text for pharmacovigilance by Thompson, Paul, Daikou, Sophia, Ueno, Kenju, Batista-Navarro, Riza, Tsujii, Jun’ichi, Ananiadou, Sophia

“…Pharmacovigilance (PV) databases record the benefits and risks of different drugs, as a means to ensure their safe and effective use. Creating and maintaining…”
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Investigating heterogeneous protein annotations toward cross-corpora utilization by Wang, Yue, Kim, Jin-Dong, Saetre, Rune, Pyysalo, Sampo, Tsujii, Jun'ichi

“…The number of corpora, collections of structured texts, has been increasing, as a result of the growing interest in the application of natural language…”
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Joint segmentation and named entity recognition using dual decomposition in Chinese discharge summaries by Xu, Yan, Wang, Yining, Liu, Tianren, Liu, Jiahua, Fan, Yubo, Qian, Yi, Tsujii, Junichi, Chang, Eric I

“…In this paper, we focus on three aspects: (1) to annotate a set of standard corpus in Chinese discharge summaries; (2) to perform word segmentation and named…”
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Named entity recognition with multiple segment representations by Cho, Han-Cheol, Okazaki, Naoaki, Miwa, Makoto, Tsujii, Jun’ichi

“…•Different segmentation representations (SRs) cause little difference in performance.•Different SRs result in quite different outputs.•Incorporation of…”
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