Search Results - "Tsiliki, G."

eNanoMapper – A database and ontology framework for design and safety assessment of nanomaterials by Kilic, G., Fadeel, B., Farcal, L., Sarimveis, H., Doganis, P., Drakakis, G., Tsiliki, G., Chomenidis, C., Helma, C., Rautenberg, M., Gebele, D., Jeliazkova, N., Kochev, N., Owen, G., Chang, J., Willighagen, E.L., Ehrhart, F., Rieswijk, L., Hongisto, V., Nymark, P., Kohonen, P., Grafström, R., Hardy, B.

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Making use of available and emerging data to predict the hazards of engineered nanomaterials by means of in silico tools: A critical review by Basei, G., Hristozov, D., Lamon, L., Zabeo, A., Jeliazkova, N., Tsiliki, G., Marcomini, A., Torsello, A.

“…The heterogeneity of engineered nanomaterials (NMs), with respect to physicochemical properties and observed (eco)toxicological effects, makes their…”
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A Data Fusion Pipeline for Generating and Enriching Adverse Outcome Pathway Descriptions by Nymark, Penny, Rieswijk, Linda, Ehrhart, Friederike, Jeliazkova, Nina, Tsiliki, Georgia, Sarimveis, Haralambos, Evelo, Chris T, Hongisto, Vesa, Kohonen, Pekka, Willighagen, Egon, Grafström, Roland C

“…Abstract Increasing amounts of systems toxicology data, including omics results, are becoming publically available and accessible in databases. Data-driven and…”
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toxFlow: A Web-Based Application for Read-Across Toxicity Prediction Using Omics and Physicochemical Data by Varsou, Dimitra-Danai, Tsiliki, Georgia, Nymark, Penny, Kohonen, Pekka, Grafström, Roland, Sarimveis, Haralambos

“…We present toxFlow, a web application developed for enrichment analysis of omics data coupled with read-across toxicity prediction. A sequential analysis…”
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The eNanoMapper database for nanomaterial safety information by Jeliazkova, Nina, Chomenidis, Charalampos, Doganis, Philip, Fadeel, Bengt, Grafström, Roland, Hardy, Barry, Hastings, Janna, Hegi, Markus, Jeliazkov, Vedrin, Kochev, Nikolay, Kohonen, Pekka, Munteanu, Cristian R, Sarimveis, Haralambos, Smeets, Bart, Sopasakis, Pantelis, Tsiliki, Georgia, Vorgrimmler, David, Willighagen, Egon

“…The NanoSafety Cluster, a cluster of projects funded by the European Commision, identified the need for a computational infrastructure for toxicological data…”
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Structuprint: a scalable and extensible tool for two-dimensional representation of protein surfaces by Kontopoulos, Dimitrios Georgios, Vlachakis, Dimitrios, Tsiliki, Georgia, Kossida, Sofia

“…The term 'molecular cartography' encompasses a family of computational methods for two-dimensional transformation of protein structures and analysis of their…”
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Next Generation Risk Assessment approaches for advanced nanomaterials: Current status and future perspectives by Hristozov, Danail, Badetti, Elena, Bigini, Paolo, Brunelli, Andrea, Dekkers, Susan, Diomede, Luisa, Doak, Shareen H., Fransman, Wouter, Gajewicz-Skretna, Agnieszka, Giubilato, Elisa, Gómez-Cuadrado, Laura, Grafström, Roland, Gutleb, Arno C., Halappanavar, Sabina, Hischier, Roland, Hunt, Neil, Katsumiti, Alberto, Kermanizadeh, Ali, Marcomini, Antonio, Moschini, Elisa, Oomen, Agnes, Pizzol, Lisa, Rumbo, Carlos, Schmid, Otmar, Shandilya, Neeraj, Stone, Vicki, Stoycheva, Stella, Stoeger, Tobias, Merino, Blanca Suarez, Tran, Lang, Tsiliki, Georgia, Vogel, Ulla Birgitte, Wohlleben, Wendel, Zabeo, Alex

“…This manuscript discusses the challenges of applying New Approach Methodologies (NAMs) for safe by design and regulatory risk assessment of advanced…”
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Enriching Nanomaterials Omics Data: An Integration Technique to Generate Biological Descriptors by Tsiliki, Georgia, Nymark, Penny, Kohonen, Pekka, Grafström, Roland, Sarimveis, Haralambos

“…The interest toward omics data is growing in the field of toxicology owing to the diverse knowledge they generate, which can improve prediction and dosage…”
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A computational approach to microarray universal reference sample by Tsiliki, G., Kaforou, S., Kapsetaki, M., Potamias, G., Kafetzopoulos, D.

“…The choice of a reference material in two-colour microarray experiments is an important issue of the experimental design. We consider a number of cell lines…”
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Multi-platform Data Integration in Microarray Analysis by Tsiliki, G., Zervakis, M., Ioannou, M., Sanidas, E., Stathopoulos, E., Potamias, G., Tsiknakis, M., Kafetzopoulos, D.

“…An increasing number of studies have profiled gene expressions in tumor specimens using distinct microarray plat forms and analysis techniques. One challenging…”
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A new gene expression signature related to breast cancer estrogen receptor status by Christodoulou, E., Ioannou, M., Kafousi, M., Sanidas, E., Papagiannakis, G., Danilatou, V., Tsiliki, G., Margaritis, T., Kondylakis, H., Manakanatas, D., Koumakis, L., Kanterakis, A., Vassilaros, S., Tsiknakis, M., Analyti, A., Potamias, G., Tsiftsis, D., Stathopoulos, E., Kafetzopoulos, D.

“…The aim of this study is to identify a gene expression signature which is characteristic of ER status in breast cancer patients. To our knowledge, this is the…”
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Facilitating scientific collaboration in data-intensive biomedical settings by Karacapilidis, N., Tzagarakis, M., Christodoulou, S., Tsiliki, G.

“…This paper reports on a Web 2.0 tool that aims to facilitate collaboration in data-intensive biomedical settings. The proposed tool can be viewed as an…”
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Multi-platform data integration in microarray analysis by Tsiliki, G., Ioannou, M., Kafetzopoulos, D., Zervakis, M., Sanidas, E., Stathopoulos, E., Tsiknakis, M.

“…An increasing number of studies have profiled gene expressions in tumor specimens using distinct microarray platforms and analysis techniques. With the…”
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Data Mining Based Collaborative Analysis of Microarray Data by Tsiliki, G., Kossida, S., Friesen, N., Rueping, S., Tzagarakis, M., Karacapilidis, N.

“…Biomedical research has recently seen a vast growth in publicly and instantly available information, which are often complementary or overlapping. As the…”
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