Search Results - "Treister, Adam"

Identifier Mapping in Cytoscape [version 2; peer review: 3 approved] by Treister, Adam, Pico, Alexander R

“…Identifier Mapping, the association of terms across disparate taxonomies and databases, is a common hurdle in bioinformatics workflows. The idmapper app for…”
Get full text

Identifier Mapping in Cytoscape: idmapper [version 1; peer review: 1 approved, 2 approved with reservations] by Treister, Adam, Pico, Alexander R

“…Identifier Mapping, the association of terms across disparate taxonomies and databases, is a common hurdle in bioinformatics workflows. The idmapper app for…”
Get full text

Data File Standard for Flow Cytometry, version FCS 3.1 by Spidlen, Josef, Moore, Wayne, Parks, David, Goldberg, Michael, Bray, Chris, Bierre, Pierre, Gorombey, Peter, Hyun, Bill, Hubbard, Mark, Lange, Simon, Lefebvre, Ray, Leif, Robert, Novo, David, Ostruszka, Leo, Treister, Adam, Wood, James, Murphy, Robert F, Roederer, Mario, Sudar, Damir, Zigon, Robert, Brinkman, Ryan R

“…The flow cytometry data file standard provides the specifications needed to completely describe flow cytometry data sets within the confines of the file…”
Get full text

Data standards for flow cytometry by Spidlen, Josef, Gentleman, Robert C, Haaland, Perry D, Langille, Morgan, Le Meur, Nolwenn, Ochs, Michael F, Schmitt, Charles, Smith, Clayton A, Treister, Adam S, Brinkman, Ryan R

“…Flow cytometry (FCM) is an analytical tool widely used for cancer and HIV/AIDS research, and treatment, stem cell manipulation and detecting microorganisms in…”
Get more information

ISAC Probe Tag Dictionary: Standardized Nomenclature for Detection and Visualization Labels Used in Cytometry and Microscopy Imaging by Blenman, Kim R. M., Spidlen, Josef, Parks, David R., Moore, Wayne, Treister, Adam, Leif, Robert, Bray, Chris, Goldberg, Michael, Brinkman, Ryan

“…Since the advent of microscopy imaging and flow cytometry, there has been an explosion in the number of probes, consisting of a component binding to an analyte…”
Get full text

The Cytoscape Automation app article collection [version 1; peer review: not peer reviewed] by Demchak, Barry, Otasek, David, Pico, Alexander R, Bader, Gary D, Ono, Keiichiro, Settle, Brett, Sage, Eric, Morris, John H, Longabaugh, William, Lopes, Christian, Kucera, Michael, Treister, Adam, Schwikowski, Benno, Molenaar, Piet, Ideker, Trey

“…Cytoscape is the premiere platform for interactive analysis, integration and visualization of network data. While Cytoscape itself delivers much basic…”
Get full text

ISAC's Gating‐ML 2.0 data exchange standard for gating description by Spidlen, Josef, Moore, Wayne, Brinkman, Ryan R.

“…The lack of software interoperability with respect to gating has traditionally been a bottleneck preventing the use of multiple analytical tools and…”
Get full text

ISAC's classification results file format by Spidlen, Josef, Bray, Chris, Brinkman, Ryan R.

“…Identifying homogenous sets of cell populations in flow cytometry is an important process for sorting and selecting populations of interests for further data…”
Get full text

Data File Standard for Flow Cytometry, Version FCS 3.11 by Spidlen, Josef, Moore, Wayne, Parks, David, Goldberg, Michael, Bray, Chris, Bierre, Pierre, Gorombey, Peter, Hyun, Bill, Hubbard, Mark, Lange, Simon, Lefebvre, Ray, Leif, Robert, Novo, David, Ostruszka, Leo, Treister, Adam, Wood, James, Murphy, Robert F., Roederer, Mario, Sudar, Damir, Zigon, Robert, Brinkman, Ryan R.

“…The flow cytometry data file standard provides the specifications needed to completely describe flow cytometry data sets within the confines of the file…”
Get full text

Probability binning comparison: A metric for quantitating univariate distribution differences by Roederer, Mario, Treister, Adam, Moore, Wayne, Herzenberg, Leonore A.

“…Background Comparing distributions of data is an important goal in many applications. For example, determining whether two samples (e.g., a control and test…”
Get full text

Probability binning comparison: a metric for quantitating multivariate distribution differences by Roederer, Mario, Moore, Wayne, Treister, Adam, Hardy, Richard R., Herzenberg, Leonore A.

“…Background While several algorithms for the comparison of univariate distributions arising from flow cytometric analyses have been developed and studied for…”
Get full text