Search Results - "Treen, Daniel"

BLINK enables ultrafast tandem mass spectrometry cosine similarity scoring by Harwood, Thomas V., Treen, Daniel G. C., Wang, Mingxun, de Jong, Wibe, Northen, Trent R., Bowen, Benjamin P.

“…Metabolomics has a long history of using cosine similarity to match experimental tandem mass spectra to databases for compound identification. Here we…”
Get full text

SIMILE enables alignment of tandem mass spectra with statistical significance by Treen, Daniel G. C., Wang, Mingxun, Xing, Shipei, Louie, Katherine B., Huan, Tao, Dorrestein, Pieter C., Northen, Trent R., Bowen, Benjamin P.

“…Interrelating small molecules according to their aligned fragmentation spectra is central to tandem mass spectrometry-based untargeted metabolomics. Current…”
Get full text

A multi-omic characterization of temperature stress in a halotolerant Scenedesmus strain for algal biotechnology by Calhoun, Sara, Bell, Tisza Ann Szeremy, Dahlin, Lukas R., Kunde, Yuliya, LaButti, Kurt, Louie, Katherine B., Kuftin, Andrea, Treen, Daniel, Dilworth, David, Mihaltcheva, Sirma, Daum, Christopher, Bowen, Benjamin P., Northen, Trent R., Guarnieri, Michael T., Starkenburg, Shawn R., Grigoriev, Igor V.

“…Microalgae efficiently convert sunlight into lipids and carbohydrates, offering bio-based alternatives for energy and chemical production. Improving algal…”
Get full text

Multilab EcoFAB study shows highly reproducible physiology and depletion of soil metabolites by a model grass by Sasse, Joelle, Kant, Josefine, Cole, Benjamin J., Klein, Andrew P., Arsova, Borjana, Schlaepfer, Pascal, Gao, Jian, Lewald, Kyle, Zhalnina, Kateryna, Kosina, Suzanne, Bowen, Benjamin P., Treen, Daniel, Vogel, John, Visel, Axel, Watt, Michelle, Dangl, Jeffery L., Northen, Trent R.

“…There is a dynamic reciprocity between plants and their environment: soil physiochemical properties influence plant morphology and metabolism, and root…”
Get full text

Cooking shapes the structure and function of the gut microbiome by Carmody, Rachel N., Bisanz, Jordan E., Bowen, Benjamin P., Maurice, Corinne F., Lyalina, Svetlana, Louie, Katherine B., Treen, Daniel, Chadaideh, Katia S., Maini Rekdal, Vayu, Bess, Elizabeth N., Spanogiannopoulos, Peter, Ang, Qi Yan, Bauer, Kylynda C., Balon, Thomas W., Pollard, Katherine S., Northen, Trent R., Turnbaugh, Peter J.

“…Diet is a critical determinant of variation in gut microbial structure and function, outweighing even host genetics 1 – 3 . Numerous microbiome studies have…”
Get full text

Multi-omics profiling of the cold tolerant Monoraphidium minutum 26B-AM in response to abiotic stress by Calhoun, Sara, Kamel, Bishoy, Bell, Tisza A.S., Kruse, Colin P.S., Riley, Robert, Singan, Vasanth, Kunde, Yuliya, Gleasner, Cheryl D., Chovatia, Mansi, Sandor, Laura, Daum, Christopher, Treen, Daniel, Bowen, Benjamin P., Louie, Katherine B., Northen, Trent R., Starkenburg, Shawn R., Grigoriev, Igor V.

“…Microalgae that are of interest for biofuel production must be able to tolerate environmental changes that occur in outdoor cultivation systems. While algal…”
Get full text

Multi-omics profiling of the cold tolerant Monoraphidium minutum 26B-AM in response to abiotic stress by Calhoun, Sara, Kamel, Bishoy, Bell, Tisza A. S., Kruse, Colin P. S., Riley, Robert, Singan, Vasanth, Kunde, Yuliya, Gleasner, Cheryl D., Chovatia, Mansi, Sandor, Laura, Daum, Christopher, Treen, Daniel, Bowen, Benjamin P., Louie, Katherine B., Northen, Trent R., Starkenburg, Shawn R., Grigoriev, Igor V.

“…Microalgae that are of interest for biofuel production must be able to tolerate environmental changes that occur in outdoor cultivation systems. While algal…”
Get full text