Search Results - "Tranchant‐Dubreuil, Christine"

Ecological and genomic vulnerability to climate change across native populations of Robusta coffee (Coffea canephora) by Tournebize, Rémi, Borner, Leyli, Manel, Stéphanie, Meynard, Christine N., Vigouroux, Yves, Crouzillat, Dominique, Fournier, Coralie, Kassam, Mohamed, Descombes, Patrick, Tranchant‐Dubreuil, Christine, Parrinello, Hugues, Kiwuka, Catherine, Sumirat, Ucu, Legnate, Hyacinthe, Kambale, Jean‐Léon, Sonké, Bonaventure, Mahinga, Jose Cassule, Musoli, Pascal, Janssens, Steven B., Stoffelen, Piet, Kochko, Alexandre, Poncet, Valérie

“…The assessment of population vulnerability under climate change is crucial for planning conservation as well as for ensuring food security. Coffea canephora…”
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FrangiPANe, a tool for creating a panreference using left behind reads by Christine, Tranchant-Dubreuil, Clothilde, Chenal, Mathieu, Blaison, Laurence, Albar, Valentin, Klein, Cédric, Mariac, Wing Rod, A., Yves, Vigouroux, Francois, Sabot

“…Abstract We present here FrangiPANe, a pipeline developed to build panreference using short reads through a map-then-assemble strategy. Applying it to 248…”
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Genome Wide Association Study Pinpoints Key Agronomic QTLs in African Rice Oryza glaberrima by Cubry, Philippe, Pidon, Hélène, Ta, Kim Nhung, Tranchant-Dubreuil, Christine, Thuillet, Anne-Céline, Holzinger, Maria, Adam, Hélène, Kam, Honoré, Chrestin, Harold, Ghesquière, Alain, François, Olivier, Sabot, François, Vigouroux, Yves, Albar, Laurence, Jouannic, Stefan

“…Background African rice, Oryza glaberrima , is an invaluable resource for rice cultivation and for the improvement of biotic and abiotic resistance properties…”
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Micro‐collinearity and genome evolution in the vicinity of an ethylene receptor gene of cultivated diploid and allotetraploid coffee species (Coffea) by Yu, Qingyi, Guyot, Romain, de Kochko, Alexandre, Byers, Anne, Navajas‐Pérez, Rafael, Langston, Brennick J., Dubreuil‐Tranchant, Christine, Paterson, Andrew H., Poncet, Valérie, Nagai, Chifumi, Ming, Ray

“…Summary Arabica coffee (Coffea arabica L.) is a self‐compatible perennial allotetraploid species (2n = 4x = 44), whereas Robusta coffee (C. canephora L.) is a…”
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In Silico Mining of Microsatellites in Coding Sequences of the Date Palm (Arecaceae) Genome, Characterization, and Transferability by Aberlenc-Bertossi, Frédérique, Castillo, Karina, Tranchant-Dubreuil, Christine, Chérif, Emira, Ballardini, Marco, Abdoulkader, Sabira, Gros-Balthazard, Muriel, Chabrillange, Nathalie, Santoni, Sylvain, Mercuri, Antonio, Pintaud, Jean-Christophe

“…Premise of the study: To complement existing sets of primarily dinucleotide microsatellite loci from noncoding sequences of date palm, we developed primers for…”
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The Rise and Fall of African Rice Cultivation Revealed by Analysis of 246 New Genomes by Cubry, Philippe, Tranchant-Dubreuil, Christine, Thuillet, Anne-Céline, Monat, Cécile, Ndjiondjop, Marie-Noelle, Labadie, Karine, Cruaud, Corinne, Engelen, Stefan, Scarcelli, Nora, Rhoné, Bénédicte, Burgarella, Concetta, Dupuy, Christian, Larmande, Pierre, Wincker, Patrick, François, Olivier, Sabot, François, Vigouroux, Yves

“…African rice (Oryza glaberrima) was domesticated independently from Asian rice. The geographical origin of its domestication remains elusive. Using 246 new…”
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Haitian coffee agroforestry systems harbor complex arabica variety mixtures and under-recognized genetic diversity by Millet, Claude Patrick, Allinne, Clémentine, Vi, Tram, Marraccini, Pierre, Verleysen, Lauren, Couderc, Marie, Ruttink, Tom, Zhang, Dapeng, Sanchéz, William Solano, Tranchant-Dubreuil, Christine, Jeune, Wesly, Poncet, Valérie

“…Though facing significant challenges, coffee (Coffea arabica) grown in Haitian agroforestry systems are important contributors to rural livelihoods and provide…”
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Chlorophyll fluorescence-based high-throughput phenotyping facilitates the genetic dissection of photosynthetic heat tolerance in African (Oryza glaberrima) and Asian (Oryza sativa) rice by Robson, Jordan K, Ferguson, John N, McAusland, Lorna, Atkinson, Jonathan A, Tranchant-Dubreuil, Christine, Cubry, Phillipe, Sabot, François, Wells, Darren M, Price, Adam H, Wilson, Zoe A, Murchie, Erik H

“…Abstract Rising temperatures and extreme heat events threaten rice production. Half of the global population relies on rice for basic nutrition, and therefore…”
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Aquaporins are main contributors to root hydraulic conductivity in pearl millet [Pennisetum glaucum (L) R. Br.] by Grondin, Alexandre, Affortit, Pablo, Tranchant-Dubreuil, Christine, de la Fuente-Cantó, Carla, Mariac, Cédric, Gantet, Pascal, Vadez, Vincent, Vigouroux, Yves, Laplaze, Laurent

“…Pearl millet is a key cereal for food security in arid and semi-arid regions but its yield is increasingly threatened by water stress. Physiological mechanisms…”
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Development and evaluation of a genome‐wide Coffee 8.5K SNP array and its application for high‐density genetic mapping and for investigating the origin of Coffea arabica L by Merot‐L'anthoene, Virginie, Tournebize, Rémi, Darracq, Olivier, Rattina, Vimel, Lepelley, Maud, Bellanger, Laurence, Tranchant‐Dubreuil, Christine, Coulée, Manon, Pégard, Marie, Metairon, Sylviane, Fournier, Coralie, Stoffelen, Piet, Janssens, Steven B., Kiwuka, Catherine, Musoli, Pascal, Sumirat, Ucu, Legnaté, Hyacinthe, Kambale, Jean‐Léon, Ferreira da Costa Neto, João, Revel, Clara, de Kochko, Alexandre, Descombes, Patrick, Crouzillat, Dominique, Poncet, Valérie

“…Summary Coffee species such as Coffea canephora P. (Robusta) and C. arabica L. (Arabica) are important cash crops in tropical regions around the world…”
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An improved assembly of the pearl millet reference genome using Oxford Nanopore long reads and optical mapping by Salson, Marine, Orjuela, Julie, Mariac, Cédric, Zekraouï, Leïla, Couderc, Marie, Arribat, Sandrine, Rodde, Nathalie, Faye, Adama, Kane, Ndjido A, Tranchant-Dubreuil, Christine, Vigouroux, Yves, Berthouly-Salazar, Cécile

“…Abstract Pearl millet (Pennisetum glaucum (L.)) R. Br. syn. Cenchrus americanus (L.) Morrone) is an important crop in South Asia and sub-Saharan Africa which…”
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Phylogeography and niche modelling of the relict plant Amborella trichopoda (Amborellaceae) reveal multiple Pleistocene refugia in New Caledonia by Poncet, Valérie, Munoz, François, Munzinger, Jérôme, Pillon, Yohan, Gomez, Céline, Couderc, Marie, Tranchant‐Dubreuil, Christine, Hamon, Serge, Kochko, Alexandre

“…Amborella trichopoda Baill. (Amborellaceae, Amborellales), the sole living member of the sister group to all other extant angiosperms, is endemic to New…”
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MooSciTIC: Training of trainers in West African research and higher education by Atindehou, Ménonvè, Adéoti, Kifouli, Loko, Laura Estelle Yêyinou, Beulé, Thierry, Paradis, Emmanuel, Djedatin, Gustave, Tranchant-Dubreuil, Christine, Sabot, François, Lagnika, Latifou, Jaligot, Estelle

“…The MooSciTIC project is a capacity-building initiative targeting West African research scientists and higher education teachers. The project aimed to improve…”
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Mutations in Rice yellow mottle virus Polyprotein P2a Involved in RYMV2 Gene Resistance Breakdown by Pinel-Galzi, Agnès, Dubreuil-Tranchant, Christine, Hébrard, Eugénie, Mariac, Cédric, Ghesquière, Alain, Albar, Laurence

“…(RYMV) is one of the major diseases of rice in Africa. The high resistance of the Tog7291 accession involves a null allele of the gene, whose ortholog in , ,…”
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Transcriptome analysis during somatic embryogenesis of the tropical monocot Elaeis guineensis: evidence for conserved gene functions in early development by Lin, Hsiang-Chun, Morcillo, Fabienne, Dussert, Stéphane, Tranchant-Dubreuil, Christine, Tregear, James W, Tranbarger, Timothy John

“…With the aim of understanding the molecular mechanisms underlying somatic embryogenesis (SE) in oil palm, we examined transcriptome changes that occur when…”
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Ancestral synteny shared between distantly-related plant species from the asterid (Coffea canephora and Solanum Sp.) and rosid (Vitis vinifera) clades by Guyot, Romain, Lefebvre-Pautigny, Florent, Tranchant-Dubreuil, Christine, Rigoreau, Michel, Hamon, Perla, Leroy, Thierry, Hamon, Serge, Poncet, Valérie, Crouzillat, Dominique, de Kochko, Alexandre

“…Coffee trees (Rubiaceae) and tomato (Solanaceae) belong to the Asterid clade, while grapevine (Vitaceae) belongs to the Rosid clade. Coffee and tomato…”
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Microsatellite markers for Amborella (Amborellaceae), a monotypic genus endemic to New Caledonia by Poncet, Valérie, Couderc, Marie, Tranchant-Dubreuil, Christine, Gomez, Céline, Hamon, Perla, Hamon, Serge, Pillon, Yohan, Munzinger, Jérôme, de Kochko, Alexandre

“…• Premise of the study: Informative markers are required for assessing the diversity of Amborella trichopoda, the only species of its order, endemic to New…”
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efficient and rapid protocol for plant nuclear DNA preparation suitable for next generation sequencing methods by Carrier, Gregory, Santoni, Sylvain, Rodier-Goud, Marguerite, Canaguier, Aurélie, Kochko, Alexandre de, Dubreuil-Tranchant, Christine, This, Patrice, Boursiquot, Jean-Michel, Cunff, Loïc Le

“…Premise of the study: In this study, we developed a nuclear DNA extraction protocol for Next Generation Sequencers (NGS). METHODS: and Results: We applied this…”
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MoccaDB - an integrative database for functional, comparative and diversity studies in the Rubiaceae family by Plechakova, Olga, Tranchant-Dubreuil, Christine, Benedet, Fabrice, Couderc, Marie, Tinaut, Alexandra, Viader, Véronique, De Block, Petra, Hamon, Perla, Campa, Claudine, de Kochko, Alexandre, Hamon, Serge, Poncet, Valérie

“…In the past few years, functional genomics information has been rapidly accumulating on Rubiaceae species and especially on those belonging to the Coffea genus…”
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Rice yellow mottle virus stress responsive genes from susceptible and tolerant rice genotypes by Ventelon-Debout, Marjolaine, Tranchant-Dubreuil, Christine, Nguyen, Thi-Thu-Huang, Bangratz, Martine, Siré, Christelle, Delseny, Michel, Brugidou, Christophe

“…The effects of viral infection involve concomitant plant gene variations and cellular changes. A simple system is required to assess the complexity of host…”
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