Search Results - "Torcivia, John"

Whole genome sequencing of live attenuated Leishmania donovani parasites reveals novel biomarkers of attenuation and enables product characterization by Gannavaram, Sreenivas, Torcivia, John, Gasparyan, Lusine, Kaul, Amit, Ismail, Nevien, Simonyan, Vahan, Nakhasi, Hira L.

“…No licensed human vaccines are currently available against leishmaniasis. Several anti-leishmanial vaccines are currently undergoing testing, including…”
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Exploring and retrieving sequence and metadata for species across the tree of life with NCBI Datasets by O’Leary, Nuala A., Cox, Eric, Holmes, J. Bradley, Anderson, W. Ray, Falk, Robert, Hem, Vichet, Tsuchiya, Mirian T. N., Schuler, Gregory D., Zhang, Xuan, Torcivia, John, Ketter, Anne, Breen, Laurie, Cothran, Jonathan, Bajwa, Hena, Tinne, Jovany, Meric, Peter A., Hlavina, Wratko, Schneider, Valerie A.

“…To explore complex biological questions, it is often necessary to access various data types from public data repositories. As the volume and complexity of…”
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Investigation of somatic single nucleotide variations in human endogenous retrovirus elements and their potential association with cancer by Chang, Ting-Chia, Goud, Santosh, Torcivia-Rodriguez, John, Hu, Yu, Pan, Qing, Kahsay, Robel, Blomberg, Jonas, Mazumder, Raja

“…Human endogenous retroviruses (HERVs) have been investigated for potential links with human cancer. However, the distribution of somatic nucleotide variations…”
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NCBI taxonomy: enhanced access via NCBI datasets by Cox, Eric, Tsuchiya, Mirian T N, Ciufo, Stacy, Torcivia, John, Falk, Robert, Anderson, W Ray, Holmes, J Bradley, Hem, Vichet, Breen, Laurie, Davis, Emily, Ketter, Anne, Zhang, Peifen, Soussov, Vladimir, Schoch, Conrad L, O'Leary, Nuala A

“…The NCBI Taxonomy resource (https://www.ncbi.nlm.nih.gov/taxonomy) has long been a trusted, curated hub for organism names, classifications, and links to…”
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Whole Genome Variant Dataset for Enriching Studies across 18 Different Cancers by Torcivia, John, Abdilleh, Kawther, Seidl, Fabian, Shahzada, Owais, Rodriguez, Rebecca, Pot, David, Mazumder, Raja

“…Whole genome sequencing (WGS) has helped to revolutionize biology, but the computational challenge remains for extracting valuable inferences from this…”
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An Exploration of Cancer-Associated Non-Coding Variations in Whole Genome Sequencing Data by Torcivia, John Paul

“…Genomics has benefited from an explosion in affordable high-throughput technology for whole genome sequencing. The regulatory and functional aspects in…”
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BioMuta and BioXpress: mutation and expression knowledgebases for cancer biomarker discovery by Dingerdissen, Hayley M, Torcivia-Rodriguez, John, Hu, Yu, Chang, Ting-Chia, Mazumder, Raja, Kahsay, Robel

“…Abstract Single-nucleotide variation and gene expression of disease samples represent important resources for biomarker discovery. Many databases have been…”
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Abstract 3824: Human pan-cancer variomes and their epigenetic profiles: Extending beyond the coding region by Torcivia-Rodriguez, John P., Mazumder, Raja

“…Abstract The identification on different cancer lines of non-synonymous single nucleotide variations (nsSNVs) has exploded as sequencing technology has…”
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A complete Leishmania donovani reference genome identifies novel genetic variations associated with virulence by Lypaczewski, Patrick, Hoshizaki, Johanna, Zhang, Wen-Wei, McCall, Laura-Isobel, Torcivia-Rodriguez, John, Simonyan, Vahan, Kaur, Amanpreet, Dewar, Ken, Matlashewski, Greg

“…Leishmania donovani is responsible for visceral leishmaniasis, a neglected and lethal parasitic disease with limited treatment options and no vaccine. The…”
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Distribution bias analysis of germline and somatic single-nucleotide variations that impact protein functional site and neighboring amino acids by Pan, Yang, Yan, Cheng, Hu, Yu, Fan, Yu, Pan, Qing, Wan, Quan, Torcivia-Rodriguez, John, Mazumder, Raja

“…Single nucleotide variations (SNVs) can result in loss or gain of protein functional sites. We analyzed the effects of SNVs on enzyme active sites, ligand…”
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A Primer for Access to Repositories of Cancer-Related Genomic Big Data by Torcivia-Rodriguez, John, Dingerdissen, Hayley, Chang, Ting-Chia, Mazumder, Raja

“…The use of large datasets has become ubiquitous in biomedical sciences. Researchers in the field of cancer genomics have, in recent years, generated large…”
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Pubcast and Genecast: Browsing and Exploring Publications and Associated Curated Content in Biology Through Mobile Devices by Goldweber, Scott, Theodore, Jamal, Torcivia-Rodriguez, John, Simonyan, Vahan, Mazumder, Raja

“…Services such as Facebook, Amazon, and eBay were once solely accessed from stationary computers. These web services are now being used increasingly on mobile…”
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High-performance integrated virtual environment (HIVE): a robust infrastructure for next-generation sequence data analysis by Simonyan, Vahan, Chumakov, Konstantin, Dingerdissen, Hayley, Faison, William, Goldweber, Scott, Golikov, Anton, Gulzar, Naila, Karagiannis, Konstantinos, Vinh Nguyen Lam, Phuc, Maudru, Thomas, Muravitskaja, Olesja, Osipova, Ekaterina, Pan, Yang, Pschenichnov, Alexey, Rostovtsev, Alexandre, Santana-Quintero, Luis, Smith, Krista, Thompson, Elaine E, Tkachenko, Valery, Torcivia-Rodriguez, John, Voskanian, Alin, Wan, Quan, Wang, Jing, Wu, Tsung-Jung, Wilson, Carolyn, Mazumder, Raja

“…The High-performance Integrated Virtual Environment (HIVE) is a distributed storage and compute environment designed primarily to handle next-generation…”
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