Search Results - "Tomfohr, John K"

Measurement of Cell Migration on Surface-Bound Fibronectin Gradients by Smith, Jason T, Tomfohr, John K, Wells, Matthew C, Beebe, Thomas P, Kepler, Thomas B, Reichert, W. Monty

“…A novel technique for the quantitative observation of cell migration along linear gradient substrates functionalized with adhesive proteins is presented…”
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Identifying differential expression in multiple SAGE libraries: an overdispersed log-linear model approach by Lu, Jun, Tomfohr, John K, Kepler, Thomas B

“…In testing for differential gene expression involving multiple serial analysis of gene expression (SAGE) libraries, it is critical to account for both between…”
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Electron Transport Properties of a Carotene Molecule in a Metal−(Single Molecule)−Metal Junction by Ramachandran, Ganesh K, Tomfohr, John K, Li, Jun, Sankey, Otto F, Zarate, Xristo, Primak, Alex, Terazono, Yuichi, Moore, Thomas A, Moore, Ana L, Gust, Devens, Nagahara, Larry A, Lindsay, Stuart M

“…Using a recently developed method for tethering gold contacts to single molecules, we have measured current versus voltage (I−V) data for single…”
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Simple Estimates of the Electron Transport Properties of Molecules by Tomfohr, John K., Sankey, Otto F.

“…We discuss how the complex bandstructure describes tunneling within a molecule, and how it can be used to understand single molecule conduction. Simple…”
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Evaluating genome-wide DNA methylation changes in mice by Methylation Specific Digital Karyotyping by Boon, Kathy, Tomfohr, John K, Bailey, Nathaniel W, Garantziotis, Stavros, Li, Zhuowei, Brass, David M, Maruoka, Shuichiro, Hollingsworth, John W, Schwartz, David A

“…The study of genome-wide DNA methylation changes has become more accessible with the development of various array-based technologies though when studying…”
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Advances and applications in the FIREBALLab initio tight-binding molecular-dynamics formalism by Lewis, James P, Jelinek, Pavel, Ortega, Jose, Demkov, Alexander A, Trabada, Daniel G, Haycock, Barry, Wang, Hao, Adams, Gary, Tomfohr, John K, Abad, Enrique, Wang, Hong, Drabold, David A

“…One of the outstanding advancements in electronic-structure density-functional methods is the Sankey-Niklewski (SN) approach [Sankey and Niklewski, Phys. Rev…”
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Statistical analysis of antigen receptor spectratype data by Kepler, Thomas B., He, Min, Tomfohr, John K., Devlin, Blythe H., Sarzotti, Marcella, Markert, M. Louise

“…Motivation: The effectiveness of vertebrate adaptive immunity depends crucially on the establishment and maintenance of extreme diversity in the antigen…”
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SpA: web-accessible spectratype analysis: data management, statistical analysis and visualization by He, Min, Tomfohr, John K., Devlin, Blythe H., Sarzotti, Marcella, Markert, M. Louise, Kepler, Thomas B.

“…SpA is a web-accessible system for the management, visualization and statistical analysis of T-cell receptor spectratype data. Users upload data from their…”
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Time-Dependent Simulation of Conduction through a Molecule by Tomfohr, John K., Sankey, Otto F.

“…We present a method for performing time‐dependent simulations of electron conduction through molecules. The method is based on the time‐dependent Schrödinger…”
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Electric field effects on the octanedithiol wire by Li, Jun, Tomfohr, John K., Sankey, Otto F.

“…We theoretically study the electric field profile and the voltage profile across a model molecule in a metal‐molecule‐metal junction under bias. The model…”
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Advances and applications in the FIREBALL ab initio tight-binding molecular-dynamics formalism by Lewis, James P., Jelínek, Pavel, Ortega, José, Demkov, Alexander A., Trabada, Daniel G., Haycock, Barry, Wang, Hao, Adams, Gary, Tomfohr, John K., Abad, Enrique, Wang, Hong, Drabold, David A.

“…One of the outstanding advancements in electronic‐structure density‐functional methods is the Sankey–Niklewski (SN) approach [Sankey and Niklewski, Phys. Rev…”
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Non-molecular Carbon Dioxide (CO 2 ) Solids by Dong, Jianjun, Tomfohr, John K., Sankey, Otto F.

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Advances and applications in the F IREBALL ab initio tight‐binding molecular‐dynamics formalism by Lewis, James P., Jelínek, Pavel, Ortega, José, Demkov, Alexander A., Trabada, Daniel G., Haycock, Barry, Wang, Hao, Adams, Gary, Tomfohr, John K., Abad, Enrique, Wang, Hong, Drabold, David A.

“…One of the outstanding advancements in electronic‐structure density‐functional methods is the Sankey–Niklewski (SN) approach [Sankey and Niklewski, Phys. Rev…”
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Advances and applications in the FIREBALL ab initio tight-binding molecular-dynamics formalism : Large-scale simulations in materials science by LEWIS, James P, JELINEK, Pavel, HONG WANG, DRABOLD, David A, ORTEGA, Jose, DEMKOV, Alexander A, TRABADA, Daniel G, HAYCOCK, Barry, HAO WANG, ADAMS, Gary, TOMFOHR, John K, ABAD, Enrique

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Theoretical study of carotene as a molecular wire by Li, Jun, Tomfohr, John K., Sankey, Otto F.

“…Carotenoid molecules have important photo-chemical properties and may serve as molecular wires in a molecular electronic circuit. We have theoretically studied…”
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