Search Results - "Tomaso, Herbert"
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Comparison of Illumina and Oxford Nanopore Technology for genome analysis of Francisella tularensis, Bacillus anthracis, and Brucella suis
Published in BMC genomics (12-05-2023)“…Bacterial epidemiology needs to understand the spread and dissemination of strains in a One Health context. This is important for highly pathogenic bacteria…”
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Whole genome sequencing of Salmonella enterica serovars isolated from humans, animals, and the environment in Lagos, Nigeria
Published in BMC microbiology (13-06-2023)“…Salmonella infections remain an important public health issue worldwide. Some serovars of non-typhoidal Salmonella (NTS) have been associated with bloodstream…”
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3
Occurrence of Salmonella enterica and Escherichia coli in raw chicken and beef meat in northern Egypt and dissemination of their antibiotic resistance markers
Published in Gut pathogens (18-10-2017)“…The global incidence of foodborne infections and antibiotic resistance is recently increased and considered of public health concern. Currently, scarcely…”
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Emergence of Multidrug-Resistant Salmonella enterica Subspecies enterica Serovar Infantis of Multilocus Sequence Type 2283 in German Broiler Farms
Published in Frontiers in microbiology (17-07-2020)“…During the last decade, subspecies serovar Infantis ( . Infantis) has become more prevalent across Europe with an increased capability to persist in broiler…”
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5
Antimicrobial resistance in Enterobacteriaceae from healthy broilers in Egypt: emergence of colistin-resistant and extended-spectrum β-lactamase-producing Escherichia coli
Published in Gut pathogens (19-09-2018)“…Poultry remains one of the most important reservoir for zoonotic multidrug resistant pathogens. The global rise of antimicrobial resistance in Gram-negative…”
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Recombinase Polymerase Amplification Assay for Rapid Detection of Francisella tularensis
Published in Journal of Clinical Microbiology (01-07-2012)“…Article Usage Stats Services JCM Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg Facebook Google+ Mendeley…”
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Testing assembly strategies of Francisella tularensis genomes to infer an evolutionary conservation analysis of genomic structures
Published in BMC genomics (14-11-2021)“…We benchmarked sequencing technology and assembly strategies for short-read, long-read, and hybrid assemblers in respect to correctness, contiguity, and…”
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The History of Bovine Genital Campylobacteriosis in the Face of Political Turmoil and Structural Change in Cattle Farming in Germany
Published in Veterinary sciences (23-11-2023)“…Contagious bovine genital campylobacteriosis (BGC), also known as bovine venereal campylobacteriosis, is a disease relevant to international trade listed by…”
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Using affinity propagation clustering for identifying bacterial clades and subclades with whole-genome sequences of Francisella tularensis
Published in PLoS neglected tropical diseases (01-09-2020)“…By combining a reference-independent SNP analysis and average nucleotide identity (ANI) with affinity propagation clustering (APC), we developed a…”
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Duplex Lateral Flow Assay for the Simultaneous Detection of Yersinia pestis and Francisella tularensis
Published in Analytical chemistry (Washington) (06-11-2018)“…High-risk pathogens such as Francisella tularensis and Yersinia pestis are categorized as highly hazardous organisms that can be used as biological weapons…”
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Correction to: Testing assembly strategies of Francisella tularensis genomes to infer an evolutionary conservation analysis of genomic structures
Published in BMC genomics (14-12-2021)Get full text
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12
Fishing in the Soup - Pathogen Detection in Food Safety Using Metabarcoding and Metagenomic Sequencing
Published in Frontiers in microbiology (06-08-2019)“…In food safety the detection of food contaminations with pathogenic microorganisms is a race against time and often outpaced by error-prone epidemiological…”
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Genomic Diversity and Virulence Genes Characterization of Bacillus cereus sensu lato Isolated from Processing Equipment of an Algerian Dairy Plant
Published in Journal of food quality (17-11-2023)“…Bacillus cereus is a ubiquitous spore-forming bacterium causing food spoilage. In this study, seventeen B. cereus were isolated from dairy processing equipment…”
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Molecular biological identification of Babesia, Theileria, and Anaplasma species in cattle in Egypt using PCR assays, gene sequence analysis and a novel DNA microarray
Published in Veterinary parasitology (30-01-2015)“…•A DNA microarray proved to be suitable for identification and differentiation of Babesia spp. in cattle in Egypt.•Clinical cases of acute infections with…”
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15
Brucella inopinata sp. nov., isolated from a breast implant infection
Published in International journal of systematic and evolutionary microbiology (01-04-2010)“…A Gram-negative, non-motile, non-spore-forming coccoid bacterium (strain BO1(T)) was isolated recently from a breast implant infection of a 71-year-old female…”
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Identification and characterization of multidrug‐resistant ESBL‐producing Salmonella enterica serovars Kentucky and Typhimurium isolated in Tunisia CTX‐M‐61/TEM‐34, a novel cefotaxime‐hydrolysing β‐lactamase of Salmonella
Published in Journal of applied microbiology (01-01-2022)“…Aims Molecular characterization of extended‐spectrum β‐lactamases (ESBLs) among Salmonella Kentucky and Typhimurium isolates: partial sequence analysis of the…”
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Phylogenomic Analysis of Campylobacter fetus Reveals a Clonal Structure of Insertion Element ISCfe1 Positive Genomes
Published in Frontiers in microbiology (12-11-2020)“…Subspecies of the species Campylobacter fetus are associated with specific host niches including mammals and reptiles. Campylobacter fetus subsp. fetus is a…”
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Identification of Universally Applicable and Species-Specific Marker Peptides for Bacillus anthracis
Published in Life (Basel, Switzerland) (06-10-2022)“…Anthrax is a zoonotic infection caused by the bacterium Bacillus anthracis (BA). Specific identification of this pathogen often relies on targeting genes…”
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Coexistence of Pathogens in Host-Seeking and Feeding Ticks within a Single Natural Habitat in Central Germany
Published in Applied and Environmental Microbiology (01-10-2010)“…Classifications Services AEM Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg Facebook Google+ Mendeley Reddit…”
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Antimicrobial Resistance and in silico Virulence Profiling of Aliarcobacter butzleri Strains From German Water Poultry
Published in Frontiers in microbiology (14-12-2020)“…is an emerging foodborne and zoonotic pathogen that is usually transmitted via contaminated food or water. is not only the most prevalent species, it is also…”
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