Search Results - "Timilsena, Prakash Raj"

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  1. 1
    Building a foundation for gene family analysis in Rosaceae genomes with a novel workflow: A case study in Pyrus architecture genes

    Building a foundation for gene family analysis in Rosaceae genomes with a novel workflow: A case study in Pyrus architecture genes by Zhang, Huiting, Wafula, Eric K, Eilers, Jon, Harkess, Alex E, Ralph, Paula E, Timilsena, Prakash Raj, dePamphilis, Claude W, Waite, Jessica M, Honaas, Loren A

    Published in Frontiers in plant science (14-11-2022)
    “…The rapid development of sequencing technologies has led to a deeper understanding of plant genomes. However, direct experimental evidence connecting genes to…”
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  2. 2
    Phylogenomic resolution of order- and family-level monocot relationships using 602 single-copy nuclear genes and 1375 BUSCO genes

    Phylogenomic resolution of order- and family-level monocot relationships using 602 single-copy nuclear genes and 1375 BUSCO genes by Timilsena, Prakash Raj, Wafula, Eric K, Barrett, Craig F, Ayyampalayam, Saravanaraj, McNeal, Joel R, Rentsch, Jeremy D, McKain, Michael R, Heyduk, Karolina, Harkess, Alex, Villegente, Matthieu, Conran, John G, Illing, Nicola, Fogliani, Bruno, Ané, Cécile, Pires, J Chris, Davis, Jerrold I, Zomlefer, Wendy B, Stevenson, Dennis W, Graham, Sean W, Givnish, Thomas J, Leebens-Mack, James, dePamphilis, Claude W

    Published in Frontiers in plant science (22-11-2022)
    “…We assess relationships among 192 species in all 12 monocot orders and 72 of 77 families, using 602 conserved single-copy (CSC) genes and 1375 benchmarking…”
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  3. 3
    Phylotranscriptomic Analyses of Mycoheterotrophic Monocots Show a Continuum of Convergent Evolutionary Changes in Expressed Nuclear Genes From Three Independent Nonphotosynthetic Lineages

    Phylotranscriptomic Analyses of Mycoheterotrophic Monocots Show a Continuum of Convergent Evolutionary Changes in Expressed Nuclear Genes From Three Independent Nonphotosynthetic Lineages by Timilsena, Prakash Raj, Barrett, Craig F, Piñeyro-Nelson, Alma, Wafula, Eric K, Ayyampalayam, Saravanaraj, McNeal, Joel R, Yukawa, Tomohisa, Givnish, Thomas J, Graham, Sean W, Pires, J Chris, Davis, Jerrold I, Ané, Cécile, Stevenson, Dennis W, Leebens-Mack, Jim, Martínez-Salas, Esteban, Álvarez-Buylla, Elena R, dePamphilis, Claude W

    Published in Genome biology and evolution (04-01-2023)
    “…Abstract Mycoheterotrophy is an alternative nutritional strategy whereby plants obtain sugars and other nutrients from soil fungi. Mycoheterotrophy and…”
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  4. 4
    Phylogenomics and Comparative Transcriptomic Analyses of the Monocots

    Phylogenomics and Comparative Transcriptomic Analyses of the Monocots by Timilsena, Prakash Raj

    Published 01-01-2020
    “…Monocotyledons, which first evolved at least 140 million years ago, are one of most economically important, morphologically diverse, and dominant groups of…”
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