Search Results - "Tighe, Scott"

Advanced biofilm analysis in streams receiving organic deicer runoff by Nott, Michelle A, Driscoll, Heather E, Takeda, Minoru, Vangala, Mahesh, Corsi, Steven R, Tighe, Scott W

“…Prolific heterotrophic biofilm growth is a common occurrence in airport receiving streams containing deicers and anti-icers, which are composed of…”
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Real-Time DNA Sequencing in the Antarctic Dry Valleys Using the Oxford Nanopore Sequencer by Johnson, Sarah S, Zaikova, Elena, Goerlitz, David S, Bai, Yu, Tighe, Scott W

“…The ability to sequence DNA outside of the laboratory setting has enabled novel research questions to be addressed in the field in diverse areas, ranging from…”
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Comprehensive benchmarking and ensemble approaches for metagenomic classifiers by McIntyre, Alexa B R, Ounit, Rachid, Afshinnekoo, Ebrahim, Prill, Robert J, Hénaff, Elizabeth, Alexander, Noah, Minot, Samuel S, Danko, David, Foox, Jonathan, Ahsanuddin, Sofia, Tighe, Scott, Hasan, Nur A, Subramanian, Poorani, Moffat, Kelly, Levy, Shawn, Lonardi, Stefano, Greenfield, Nick, Colwell, Rita R, Rosen, Gail L, Mason, Christopher E

“…One of the main challenges in metagenomics is the identification of microorganisms in clinical and environmental samples. While an extensive and heterogeneous…”
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Performance assessment of DNA sequencing platforms in the ABRF Next-Generation Sequencing Study by Foox, Jonathan, Tighe, Scott W., Nicolet, Charles M., Zook, Justin M., Byrska-Bishop, Marta, Clarke, Wayne E., Khayat, Michael M., Mahmoud, Medhat, Laaguiby, Phoebe K., Herbert, Zachary T., Warner, Derek, Grills, George S., Jen, Jin, Levy, Shawn, Xiang, Jenny, Alonso, Alicia, Zhao, Xia, Zhang, Wenwei, Teng, Fei, Zhao, Yonggang, Lu, Haorong, Schroth, Gary P., Narzisi, Giuseppe, Farmerie, William, Sedlazeck, Fritz J., Baldwin, Don A., Mason, Christopher E.

“…Assessing the reproducibility, accuracy and utility of massively parallel DNA sequencing platforms remains an ongoing challenge. Here the Association of…”
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Factors influencing recovery of SARS-CoV-2 RNA in raw sewage and wastewater sludge using polyethylene glycol-based concentration method by Khan, Kamruzzaman, Tighe, Scott W, Badireddy, Appala Raju

“…Wastewater surveillance for monitoring severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is an important epidemiologic tool for the assessment of…”
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Direct RT-qPCR detection of SARS-CoV-2 RNA from patient nasopharyngeal swabs without an RNA extraction step by Bruce, Emily A, Huang, Meei-Li, Perchetti, Garrett A, Tighe, Scott, Laaguiby, Pheobe, Hoffman, Jessica J, Gerrard, Diana L, Nalla, Arun K, Wei, Yulun, Greninger, Alexander L, Diehl, Sean A, Shirley, David J, Leonard, Debra G B, Huston, Christopher D, Kirkpatrick, Beth D, Dragon, Julie A, Crothers, Jessica W, Jerome, Keith R, Botten, Jason W

“…The ongoing COVID-19 pandemic has created an unprecedented need for rapid diagnostic testing. The World Health Organization (WHO) recommends a standard assay…”
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Multi-platform assessment of transcriptome profiling using RNA-seq in the ABRF next-generation sequencing study by Li, Sheng, Tighe, Scott W, Nicolet, Charles M, Grove, Deborah, Levy, Shawn, Farmerie, William, Viale, Agnes, Wright, Chris, Schweitzer, Peter A, Gao, Yuan, Kim, Dewey, Boland, Joe, Hicks, Belynda, Kim, Ryan, Chhangawala, Sagar, Jafari, Nadereh, Raghavachari, Nalini, Gandara, Jorge, Garcia-Reyero, Natàlia, Hendrickson, Cynthia, Roberson, David, Rosenfeld, Jeffrey A, Smith, Todd, Underwood, Jason G, Wang, May, Zumbo, Paul, Baldwin, Don A, Grills, George S, Mason, Christopher E

“…For intact RNA, gene expression profiles from rRNA-depletion and poly-A enrichment are similar. In addition, rRNA- depletion enables effective analysis of…”
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Immunotranscriptomic profiling the acute and clearance phases of a human challenge dengue virus serotype 2 infection model by Hanley, John P., Tu, Huy A., Dragon, Julie A., Dickson, Dorothy M., Rio-Guerra, Roxana del, Tighe, Scott W., Eckstrom, Korin M., Selig, Nicholas, Scarpino, Samuel V., Whitehead, Stephen S., Durbin, Anna P., Pierce, Kristen K., Kirkpatrick, Beth D., Rizzo, Donna M., Frietze, Seth, Diehl, Sean A.

“…About 20–25% of dengue virus (DENV) infections become symptomatic ranging from self-limiting fever to shock. Immune gene expression changes during progression…”
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Characterizing species interactions that contribute to biofilm formation in a multispecies model of a potable water bacterial community by Thompson, Alex F, English, Erika L, Nock, Adam M, Willsey, Graham G, Eckstrom, Korin, Cairns, Brynn, Bavelock, Matthew, Tighe, Scott W, Foote, Andrea, Shulman, Hannah, Pericleous, Androulla, Gupta, Shilpi, Kadouri, Daniel E, Wargo, Matthew J

“…Microbial biofilms are ubiquitous in drinking water systems, yet our understanding of drinking water biofilms lags behind our understanding of those in other…”
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Genomic and morphological characterization of Knufia obscura isolated from the Mars 2020 spacecraft assembly facility by Chander, Atul Munish, de Melo Teixeira, Marcus, Singh, Nitin K., Williams, Michael P., Parker, Ceth W., Leo, Patrick, Stajich, Jason E., Torok, Tamas, Tighe, Scott, Mason, Christopher E., Venkateswaran, Kasthuri

“…Members of the family Trichomeriaceae, belonging to the Chaetothyriales order and the Ascomycota phylum, are known for their capability to inhabit hostile…”
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Metagenomic analysis of Aedes aegypti and Culex quinquefasciatus mosquitoes from Grenada, West Indies by Ramos-Nino, Maria E, Fitzpatrick, Daniel M, Eckstrom, Korin M, Tighe, Scott, Hattaway, Lindsey M, Hsueh, Andy N, Stone, Diana M, Dragon, Julie A, Cheetham, Sonia

“…The mosquitoes Aedes aegypti (Linnaeus, 1762) (Diptera: Culicidae) and Culex quinquefasciatus Say, 1823 (Diptera: Culicidae) are two major vectors of…”
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Acetate Supplementation as a Means of Inducing Glioblastoma Stem-Like Cell Growth Arrest by Long, Patrick M., Tighe, Scott W., Driscoll, Heather E., Fortner, Karen A., Viapiano, Mariano S., Jaworski, Diane M.

“…Glioblastoma (GBM), the most common primary adult malignant brain tumor, is associated with a poor prognosis due, in part, to tumor recurrence mediated by…”
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Author Correction: Performance assessment of DNA sequencing platforms in the ABRF Next-Generation Sequencing Study by Foox, Jonathan, Tighe, Scott W., Nicolet, Charles M., Zook, Justin M., Byrska-Bishop, Marta, Clarke, Wayne E., Khayat, Michael M., Mahmoud, Medhat, Laaguiby, Phoebe K., Herbert, Zachary T., Warner, Derek, Grills, George S., Jen, Jin, Levy, Shawn, Xiang, Jenny, Alonso, Alicia, Zhao, Xia, Zhang, Wenwei, Teng, Fei, Zhao, Yonggang, Lu, Haorong, Schroth, Gary P., Narzisi, Giuseppe, Farmerie, William, Sedlazeck, Fritz J., Baldwin, Don A., Mason, Christopher E.

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Loop-Mediated Isothermal Amplification Detection of SARS-CoV-2 and Myriad Other Applications by Moore, Keith J M, Cahill, Jeremy, Aidelberg, Guy, Aronoff, Rachel, Bektaş, Ali, Bezdan, Daniela, Butler, Daniel J, Chittur, Sridar V, Codyre, Martin, Federici, Fernan, Tanner, Nathan A, Tighe, Scott W, True, Randy, Ware, Sarah B, Wyllie, Anne L, Afshin, Evan E, Bendesky, Andres, Chang, Connie B, Dela Rosa, 2nd, Richard, Elhaik, Eran, Erickson, David, Goldsborough, Andrew S, Grills, George, Hadasch, Kathrin, Hayden, Andrew, Her, Seong-Young, Karl, Julie A, Kim, Chang Hee, Kriegel, Alison J, Kunstman, Thomas, Landau, Zeph, Land, Kevin, Langhorst, Bradley W, Lindner, Ariel B, Mayer, Benjamin E, McLaughlin, Lee A, McLaughlin, Matthew T, Molloy, Jenny, Mozsary, Christopher, Nadler, Jerry L, D'Silva, Melinee, Ng, David, O'Connor, David H, Ongerth, Jerry E, Osuolale, Olayinka, Pinharanda, Ana, Plenker, Dennis, Ranjan, Ravi, Rosbash, Michael, Rotem, Assaf, Segarra, Jacob, Schürer, Stephan, Sherrill-Mix, Scott, Solo-Gabriele, Helena, To, Shaina, Vogt, Merly C, Yu, Albert D, Mason, Christopher E

“…As the second year of the COVID-19 pandemic begins, it remains clear that a massive increase in the ability to test for SARS-CoV-2 infections in a myriad of…”
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Acetate supplementation induces growth arrest of NG2/PDGFRα-positive oligodendroglioma-derived tumor-initiating cells by Long, Patrick M, Tighe, Scott W, Driscoll, Heather E, Moffett, John R, Namboodiri, Aryan M A, Viapiano, Mariano S, Lawler, Sean E, Jaworski, Diane M

“…Cancer is associated with globally hypoacetylated chromatin and considerable attention has recently been focused on epigenetic therapies. N-acetyl-L-aspartate…”
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Life and its traces in Antarctica's McMurdo Dry Valley paleolakes: a survey of preservation by Greenfield, Samuel R., Tighe, Scott W., Bai, Yu, Goerlitz, David S., Von Turkovich, Michele, Taatjes, Douglas J., Dragon, Julie A., Johnson, Sarah Stewart

“…•Scanning electron microscopy reveals possible nanobacteria in the McMurdo Dry Valley.•Moss long extinct from the region imaged via light and scanning electron…”
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High prevalence of Phasi Charoen-like virus from wild-caught Aedes aegypti in Grenada, W.I. as revealed by metagenomic analysis by Ramos-Nino, Maria E, Fitzpatrick, Daniel M, Tighe, Scott, Eckstrom, Korin M, Hattaway, Lindsey M, Hsueh, Andy N, Stone, Diana M, Dragon, Julie, Cheetham, Sonia

“…Arboviruses cause diseases of significant global health concerns. Interactions between mosquitoes and their microbiota as well as the important role of this…”
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Validating an Automated Nucleic Acid Extraction Device for Omics in Space Using Whole Cell Microbial Reference Standards by Urbaniak, Camilla, Wong, Season, Tighe, Scott, Arumugam, Arunkumar, Liu, Bo, Parker, Ceth W., Wood, Jason M., Singh, Nitin K., Skorupa, Dana J., Peyton, Brent M., Jenson, Ryan, Karouia, Fathi, Dragon, Julie, Venkateswaran, Kasthuri

“…NASA has made great strides in the past five years to develop a suite of instruments for the International Space Station in order to perform molecular biology…”
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Molecular Characterization of Increased Amplicon Lengths in SARS-CoV-2 Reverse Transcription Loop-Mediated Isothermal Amplification Assays by Tighe, Scott W, Hayden, Andrew F, Kuentzel, Marcy L, Eckstrom, Korin M, Foox, Jonathan, Vellone, Daniel L, Finstad, Kristiaan H, Laaguiby, Pheobe K, Hoffman, Jessica J, Chittur, Sridar V

“…Loop-mediated isothermal amplification (LAMP) is a power tool for the amplification of specific RNA and DNA targets. Much like PCR, LAMP requires primers that…”
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Microbiome and metagenomic analysis of Lake Hillier Australia reveals pigment-rich polyextremophiles and wide-ranging metabolic adaptations by Sierra, Maria A, Ryon, Krista A, Tierney, Braden T, Foox, Jonathan, Bhattacharya, Chandrima, Afshin, Evan, Butler, Daniel, Green, Stefan J, Thomas, W Kelley, Ramsdell, Jordan, Bivens, Nathan J, McGrath, Ken, Mason, Christopher E, Tighe, Scott W

“…Lake Hillier is a hypersaline lake known for its distinctive bright pink color. The cause of this phenomenon in other hypersaline sites has been attributed to…”
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