Search Results - "Thrash, Adam"

Toward a more holistic method of genome assembly assessment by Thrash, Adam, Hoffmann, Federico, Perkins, Andy

“…Abstract Background A key use of high throughput sequencing technology is the sequencing and assembly of full genome sequences. These genome assemblies are…”
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In silico prediction and expression analysis of vaccine candidate genes of Campylobacter jejuni by Poudel, Sabin, Jia, Linan, Arick, Mark A., Hsu, Chuan-Yu, Thrash, Adam, Sukumaran, Anuraj T., Adhikari, Pratima, Kiess, Aaron S., Zhang, Li

“…Campylobacter jejuni (C. jejuni) is the most common food-borne pathogen that causes human gastroenteritis in the United States. Consumption of contaminated…”
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Identification of Antimicrobial Resistance Determinants in Aeromonas veronii Strain MS-17-88 Recovered From Channel Catfish ( Ictalurus punctatus ) by Tekedar, Hasan C, Arick, 2nd, Mark A, Hsu, Chuan-Yu, Thrash, Adam, Blom, Jochen, Lawrence, Mark L, Abdelhamed, Hossam

“…is a Gram-negative species ubiquitous in different aquatic environments and capable of causing a variety of diseases to a broad host range. species have the…”
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Comparative Analysis of Multiple GWAS Results Identifies Metabolic Pathways Associated with Resistance to A. flavus Infection and Aflatoxin Accumulation in Maize by Warburton, Marilyn L, Jeffers, Dan, Smith, Jessie Spencer, Scapim, Carlos, Uhdre, Renan, Thrash, Adam, Williams, William Paul

“…Aflatoxins are carcinogenic secondary metabolites produced by several species of , including , an important ear rot pathogen in maize. Most commercial corn…”
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Keanu: a novel visualization tool to explore biodiversity in metagenomes by Thrash, Adam, Arick, 2nd, Mark, Barbato, Robyn A, Jones, Robert M, Douglas, Thomas A, Esdale, Julie, Perkins, Edward J, Garcia-Reyero, Natàlia

“…One of the main challenges when analyzing complex metagenomics data is the fact that large amounts of information need to be presented in a comprehensive and…”
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A high-quality chromosome-level genome assembly of rohu carp, Labeo rohita, and its utilization in SNP-based exploration of gene flow and sex determination by Arick, Mark A, Grover, Corrinne E, Hsu, Chuan-Yu, Magbanua, Zenaida, Pechanova, Olga, Miller, Emma R, Thrash, Adam, Youngblood, Ramey C, Ezzell, Lauren, Alam, Md Samsul, Benzie, John A H, Hamilton, Matthew G, Karsi, Attila, Lawrence, Mark L, Peterson, Daniel G

“…Abstract Labeo rohita (rohu) is a carp important to aquaculture in South Asia, with a production volume close to Atlantic salmon. While genetic improvements to…”
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PAST: The Pathway Association Studies Tool to Infer Biological Meaning from GWAS Datasets by Thrash, Adam, Tang, Juliet D, DeOrnellis, Mason, Peterson, Daniel G, Warburton, Marilyn L

“…In recent years, a bioinformatics method for interpreting genome-wide association study (GWAS) data using metabolic pathway analysis has been developed and…”
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Genome‐Wide Association and Metabolic Pathway Analysis of Corn Earworm Resistance in Maize by Warburton, Marilyn L., Womack, Erika D., Tang, Juliet D., Thrash, Adam, Smith, J. Spencer, Xu, Wenwei, Murray, Seth C., Williams, W. Paul

“…Core Ideas Metabolic pathway analysis increases the utility of genome‐wide association study data to identify useful genes and mechanisms. Corn earworm (CEW)…”
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Leveraging GWAS data to identify metabolic pathways and networks involved in maize lipid biosynthesis by Li, Hui, Thrash, Adam, Tang, Juliet D., He, Linlin, Yan, Jianbing, Warburton, Marilyn L.

“…Summary Maize (Zea mays mays) oil is a rich source of polyunsaturated fatty acids (FAs) and energy, making it a valuable resource for human food, animal feed,…”
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Quack: A quality assurance tool for high throughput sequence data by Thrash, Adam, Arick, Mark, Peterson, Daniel G.

“…The quality of data generated by high-throughput DNA sequencing tools must be rapidly assessed in order to determine how useful the data may be in making…”
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Impacts on Atlantic Killifish from Neurotoxicants: Genes, Behavior, and Population-Relevant Outcomes by Albers, Janice L., Ivan, Lori N., Clark, Bryan W., Nacci, Diane E., Klingler, Rebekah H., Thrash, Adam, Steibel, Juan P., Vinas, Natalia Garcia-Reyero, Carvan, Michael J., Murphy, Cheryl A.

“…Molecular, cellular, and organismal alterations are important descriptors of toxic effects, but our ability to extrapolate and predict ecological risks is…”
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Comparative Analysis of Multiple GWAS Results Identifies Metabolic Pathways Associated with Resistance to IA. flavus/I Infection and Aflatoxin Accumulation in Maize by Warburton, Marilyn L, Jeffers, Dan, Smith, Jessie Spencer, Scapim, Carlos, Uhdre, Renan, Thrash, Adam, Williams, William Paul

“…Aflatoxins are carcinogenic secondary metabolites produced by several species of Aspergillus, including Aspergillus flavus, an important ear rot pathogen in…”
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Exploring potential biomarkers for boar sperm cryopreservation using RNA-sequencing technology by Feugang, Jean M., Thrash, Adam, Liao, Shengfa F., Ryan, Peter L., Mustapha, Popoola A., Willard, Scott T.

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Keanu: A Novel Visualization Tool to Explore Biodiversity in Metagenomes by Vinas, Natalia, Thrash, Adam, Ii, Mark Arick, Jones, Robert, Douglas, Thomas, Perkins, Edward

“…One of the main challenges when analyzing complex metagenomics data is the fact that large amounts of information need to be presented in a comprehensive and…”
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Genomic diversity and evolution of the Hawaiian Islands endemic Kokia (Malvaceae) by Kayal, Ehsan, Arick, Mark A, Hsu, Chuan-yu, Thrash, Adam, Yorkston, Mitsuko, Morden, Clifford W, Wendel, Jonathan F, Peterson, Daniel G, Grover, Corrinne E

“…Abstract Island species are highly vulnerable due to habitat destruction and their often small population sizes with reduced genetic diversity. The Hawaiian…”
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Insights into the Evolution of the New World Diploid Cottons (Gossypium, Subgenus Houzingenia) Based on Genome Sequencing by Grover, Corrinne E, Arick, Mark A, Thrash, Adam, Conover, Justin L, Sanders, William S, Peterson, Daniel G, Frelichowski, James E, Scheffler, Jodi A, Scheffler, Brian E, Wendel, Jonathan F

“…Abstract We employed phylogenomic methods to study molecular evolutionary processes and phylogeny in the geographically widely dispersed New World diploid…”
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Dual Domestication, Diversity, and Differential Introgression in Old World Cotton Diploids by Grover, Corrinne E, Arick, Mark A, Thrash, Adam, Sharbrough, Joel, Hu, Guanjing, Yuan, Daojun, Snodgrass, Samantha, Miller, Emma R, Ramaraj, Thiruvarangan, Peterson, Daniel G, Udall, Joshua A, Wendel, Jonathan F

“…Domestication in the cotton genus is remarkable in that it has occurred independently four different times at two different ploidy levels. Relatively little is…”
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Association study of crude seed protein and fat concentration in a USDA pea diversity panel by Uhdre, Renan, Coyne, Clarice J, Bourland, Britton, Piaskowski, Julia, Zheng, Ping, Ganjyal, Girish M, Zhang, Zhiwu, McGee, Rebecca J, Main, Dorrie, Bandillo, Nonoy, Morales, Mario, Ma, Yu, Chen, Chengci, Franck, William, Thrash, Adam, Warburton, Marilyn L

“…Pea (Pisum sativum L.) is a key rotational crop and is increasingly important in the food processing sector for its protein. This study focused on identifying…”
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Complete Genome Sequences of Four Campylobacter jejuni Strains Isolated from Retail Chicken Meat and Broiler Feces by Poudel, Sabin, Li, Tianmin, Arick, Mark A., Hsu, Chuan-Yu, Thrash, Adam, Sukumaran, Anuraj T., Adhikari, Pratima, Kiess, Aaron S., Zhang, Li

“…Campylobacter jejuni is the leading pathogen that causes foodborne infections. Here, we report the complete genome sequences of four C. jejuni strains isolated…”
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Comparative Genomics of an Unusual Biogeographic Disjunction in the Cotton Tribe (Gossypieae) Yields Insights into Genome Downsizing by Grover, Corrinne E, Arick, Mark A, Conover, Justin L, Thrash, Adam, Hu, Guanjing, Sanders, William S, Hsu, Chuan-Yu, Naqvi, Rubab Zahra, Farooq, Muhammad, Li, Xiaochong, Gong, Lei, Mudge, Joann, Ramaraj, Thiruvarangan, Udall, Joshua A, Peterson, Daniel G, Wendel, Jonathan F

“…Abstract Long-distance insular dispersal is associated with divergence and speciation because of founder effects and strong genetic drift. The cotton tribe…”
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