Search Results - "Thorneycroft, D."

IntAct--open source resource for molecular interaction data by Kerrien, S, Alam-Faruque, Y, Aranda, B, Bancarz, I, Bridge, A, Derow, C, Dimmer, E, Feuermann, M, Friedrichsen, A, Huntley, R, Kohler, C, Khadake, J, Leroy, C, Liban, A, Lieftink, C, Montecchi-Palazzi, L, Orchard, S, Risse, J, Robbe, K, Roechert, B, Thorneycroft, D, Zhang, Y, Apweiler, R, Hermjakob, H

“…IntAct is an open source database and software suite for modeling, storing and analyzing molecular interaction data. The data available in the database…”
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Starch mobilization in leaves by Smith, Alison M., Zeeman, Samuel C., Thorneycroft, David, Smith, Steven M.

“…Starch mobilization is well understood in cereal endosperms, but both the pathway and the regulation of the process are poorly characterized in other types of…”
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Using gene knockouts to investigate plant metabolism by Thorneycroft, David, Sherson, Sarah M., Smith, Steven M.

“…Arabidopsis functional genomics resources now make the isolation of knockout mutants in any gene of choice both realistic and increasingly straightforward…”
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Capturing variation impact on molecular interactions in the IMEx Consortium mutations data set by del-Toro, N., Duesbury, M., Koch, M., Perfetto, L., Shrivastava, A., Ochoa, D., Wagih, O., Piñero, J., Kotlyar, M., Pastrello, C., Beltrao, P., Furlong, L. I., Jurisica, I., Hermjakob, H., Orchard, S., Porras, P.

“…The current wealth of genomic variation data identified at nucleotide level presents the challenge of understanding by which mechanisms amino acid variation…”
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IntAct--open source resource for molecular interaction data by Kerrien, S, Alam-Faruque, Y, Aranda, B, Bancarz, I, Bridge, A, Derow, C, Dimmer, E, Feuermann, M, Friedrichsen, A, Huntley, R, Kohler, C, Khadake, J, Leroy, C, Liban, A, Lieftink, C, Montecchi-Palazzi, L, Orchard, S, Risse, J, Robbe, K, Roechert, B

“…IntAct is an open source database and software suite for modeling, storing and analyzing molecular interaction data. The data available in the database…”
Get full text

PRIDE: new developments and new datasets by Jones, Philip, Côté, Richard G, Cho, Sang Yun, Klie, Sebastian, Martens, Lennart, Quinn, Antony F, Thorneycroft, David, Hermjakob, Henning

“…The PRIDE (http://www.ebi.ac.uk/pride) database of protein and peptide identifications was previously described in the NAR Database Special Edition in 2006…”
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Diurnal changes in the transcriptome encoding enzymes of starch metabolism provide evidence for both transcriptional and posttranscriptional regulation of starch metabolism in Arabidopsis leaves by Smith, S.M, Fulton, D.C, Chia, T, Thorneycroft, D, Chapple, A, Dunstan, H, Hylton, C, Zeeman, S.C, Smith, A.M

“…To gain insight into the synthesis and functions of enzymes of starch metabolism in leaves of Arabidopsis L. Heynth, Affymetrix microarrays were used to…”
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Evidence for Distinct Mechanisms of Starch Granule Breakdown in Plants by Delatte, Thierry, Umhang, Martin, Trevisan, Martine, Eicke, Simona, Thorneycroft, David, Smith, Steven M., Zeeman, Samuel C.

“…The aim of this work was to understand the initial steps of starch breakdown inside chloroplasts. In the non-living endosperm of germinating cereal grains,…”
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A cytosolic glucosyltransferase is required for conversion of starch to sucrose in Arabidopsis leaves at night by Chia, Tansy, Thorneycroft, David, Chapple, Andrew, Messerli, Gaëlle, Chen, Jychian, Zeeman, Samuel C., Smith, Steven M., Smith, Alison M.

“…Summary Maltose is exported from the Arabidopsis chloroplast as the main product of starch degradation at night. To investigate its fate in the cytosol, we…”
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Plastidial alpha-glucan phosphorylase is not required for starch degradation in Arabidopsis leaves but has a role in the tolerance of abiotic stress by Zeeman, S.C, Thorneycroft, D, Schupp, N, Chapple, A, Weck, M, Dunstan, H, Haldimann, P, Bechtold, N, Smith, A.M, Smith, S.M

“…To study the role of the plastidial alpha-glucan phosphorylase in starch metabolism in the leaves of Arabidopsis, two independent mutant lines containing T-DNA…”
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α-Amylase Is Not Required for Breakdown of Transitory Starch in Arabidopsis Leaves by Yu, Tien-Shin, Zeeman, Samuel C., Thorneycroft, David, Fulton, Daniel C., Dunstan, Hannah, Lue, Wei-Ling, Hegemann, Björn, Tung, Shu-Yun, Umemoto, Takayuki, Chapple, Andrew, Tsai, Der-Long, Wang, Shue-Mei, Smith, Alison M., Chen, Jychian, Smith, Steven M.

“…The Arabidopsis thaliana genome encodes three α-amylase-like proteins (AtAMY1, AtAMY2, and AtAMY3). Only AtAMY3 has a predicted N-terminal transit peptide for…”
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An extra-plastidial  -glucan, water dikinase from Arabidopsis phosphorylates amylopectin in vitro and is not necessary for transient starch degradation by Glaring, M. A., Zygadlo, A., Thorneycroft, D., Schulz, A., Smith, S. M., Blennow, A., Baunsgaard, L.

“…Starch phosphorylation catalysed by the α-glucan, water dikinases (GWD) has profound effects on starch degradation in plants. The Arabidopsis thaliana genome…”
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