Search Results - "Thompson, Jason D."

Winnowing DNA for rare sequences: highly specific sequence and methylation based enrichment by Thompson, Jason D, Shibahara, Gosuke, Rajan, Sweta, Pel, Joel, Marziali, Andre

“…Rare mutations in cell populations are known to be hallmarks of many diseases and cancers. Similarly, differential DNA methylation patterns arise in rare cell…”
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Aggregation of Alkyllithiums in Tetrahydrofuran by Pratt, Lawrence M, Truhlar, Donald G, Cramer, Christopher J, Kass, Steven R, Thompson, Jason D, Xidos, James D

“…Density functional theory was used to examine the solvation number and aggregation state of several alkyllithium compounds in clusters with tetrahydrofuran…”
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Class IV Charge Model for the Self-Consistent Charge Density-Functional Tight-Binding Method by Kalinowski, Jaroslaw A, Lesyng, Bogdan, Thompson, Jason D, Cramer, Christopher J, Truhlar, Donald G

“…Class IV charges obtained using charge model 3 (CM3) have been shown to provide a realistic description of molecular charge distributions, even when obtained…”
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Towards cultural responsiveness in music instruction with black detained youth: an analytic autoethnography by Thompson, Jason D.

“…There is an increased interest in music instruction and research with incarcerated populations. Amid this attention is a need to learn more about how music…”
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Parametrization of a Universal Solvation Model for Molecules Containing Silicon by Winget, Paul, Thompson, Jason D, Cramer, Christopher J, Truhlar, Donald G

“…The SM5.42 solvation model is extended to include compounds containing Si. The new parameters are based on a data set of 13 octanol/water partition…”
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American Idol and the Music Classroom: A Means of Critiquing Music by Thompson, Jason D.

“…This essay emphasizes ways to raise the student interests and help students develop skills for analyzing music and music performances through the television…”
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New Universal Solvation Model and Comparison of the Accuracy of the SM5.42R, SM5.43R, C-PCM, D-PCM, and IEF-PCM Continuum Solvation Models for Aqueous and Organic Solvation Free Energies and for Vapor Pressures by Thompson, Jason D, Cramer, Christopher J, Truhlar, Donald G

“…We present a new continuum solvation model, called Solvation Model 5.43R (SM5.43R). The model is based on the generalized Born approximation for electrostatics…”
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Parameterization of charge model 3 for AM1, PM3, BLYP, and B3LYP by Thompson, Jason D., Cramer, Christopher J., Truhlar, Donald G.

“…We have recently developed a new Class IV charge model for calculating partial atomic charges in molecules. The new model, called Charge Model 3 (CM3), was…”
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Charge Model 3:  A Class IV Charge Model Based on Hybrid Density Functional Theory with Variable Exchange by Winget, Paul, Thompson, Jason D, Xidos, James D, Cramer, Christopher J, Truhlar, Donald G

“…We present a new class IV charge model. The model, called Charge Model 3 (CM3), is designed to be able to obtain accurate partial charges from hybrid density…”
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Bis-imidazoles as molecular probes for peripheral sites of the zinc endopeptidase of botulinum neurotoxin serotype A by Merino, Isidro, Thompson, Jason D., Millard, Charles B., Schmidt, James J., Pang, Yuan-Ping

“…Botulinum neurotoxin serotype A (BoNTA) is highly toxic, and its antidote is currently unavailable. The essential light-chain subunit of BoNTA is a zinc…”
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Electronic Structure and Bonding in Hexacoordinate Silyl-Palladium Complexes by Sherer, Edward C., Kinsinger, Christopher R., Kormos, Bethany L., Thompson, Jason D., Cramer, Christopher J.

“…PdII not PdVI: Electronic structure calculations indicate that the central palladium atom in the trinuclear Pd compound (see picture) is bonded to two SiH2R…”
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A Class IV Charge Model for Boron Based on Hybrid Density Functional Theory by Brom, Joseph M, Schmitz, Brian J, Thompson, Jason D, Cramer, Christopher J, Truhlar, Donald G

“…We present a class IV charge model, in particular charge model 3 (CM3), for molecules containing boron. The model is designed to be able to obtain particularly…”
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Electronic Structure and Bonding in Hexacoordinate Silyl–Palladium Complexes Support from the National Science Foundation (CHE-9876792) is gratefully acknowledged by Sherer, Edward C., Kinsinger, Christopher R., Kormos, Bethany L., Thompson, Jason D., Cramer, Christopher J.

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What we know--and don't know--about water quality at stream crossings by Taylor, S.E, Rummer, R.B, Yoo, K.H, Welch, R.A, Thompson, J.D

“…Abstract Forest road stream crossings, including fords, culverts, and bridges, are primary contributors of sediment to forest streams. Information on the water…”
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An Instrument for Automated Purification of Nucleic Acids from Contaminated Forensic Samples by Broemeling, David J., Pel, Joel, Gunn, Dylan C., Mai, Laura, Thompson, Jason D., Poon, Hiron, Marziali, Andre

“…Forensic crime scene sample analysis, by its nature, often deals with samples in which there are low amounts of nucleic acids, on substrates that often lead to…”
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A Cooperative Molecular Modeling Exercise—The Hypersurface as Classroom by Cramer, Christopher J, Kormos, Bethany L, Winget, Paul, Audette, Vanessa M, Beebe, Jeremy M, Brauer, Carolyn S, Burdick, W. Russ, Cochran, Eric W, Eklov, Brian L, Giese, Timothy J, Jun, Yongseok, Kesavan, Lakshmi S. D, Kinsinger, Christopher R, Minyaev, Mickail E, Rajamani, Ramkumar, Salsbury, Jonathon S, Stubbs, John M, Surek, Jack T, Thompson, Jason D, Voelz, Vincent A, Wick, Collin D, Zhang, Ling

“…A molecular modeling exercise and an associated exam that have both competitive and cooperative learning aspects are described. Collaborative efforts are…”
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Electronic Structure and Bonding in Hexacoordinate Silyl–Palladium Complexes Support from the National Science Foundation (CHE-9876792) is gratefully acknowledged by Sherer, Edward C., Kinsinger, Christopher R., Kormos, Bethany L., Thompson, Jason D., Cramer, Christopher J.

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The Role of Rap Music Composition in the Experience of Incarceration for African American Youth by Thompson, Jason D

“…The research is set against the backdrop of a significant growth in the number of music programs occurring in detention centers in the US (Lee, 2010) and in…”
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American Idol and the music classroom: a means of critiquing music: a television show about popular music performance can be a bridge to teaching selected music concepts by Thompson, Jason D

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Density-functional theory and hybrid density-functional theory continuum solvation models for aqueous and organic solvents: universal SM5.43 and SM5.43R solvation models for any fraction of Hartree-Fock exchange by Thompson, Jason D., Cramer, Christopher J., Truhlar, Donald G.

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