Search Results - "Thompson, Addie M"

Genomic regions influencing the hyperspectral phenome of deoxynivalenol infected wheat by Concepcion, Jonathan S., Noble, Amanda D., Thompson, Addie M., Dong, Yanhong, Olson, Eric L.

“…The quantitative nature of fusarium head blight (FHB) resistance requires further exploration of the wheat genome to identify regions conferring resistance. In…”
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Topological data analysis reveals a core gene expression backbone that defines form and function across flowering plants by Palande, Sourabh, Kaste, Joshua A M, Roberts, Miles D, Segura Abá, Kenia, Claucherty, Carly, Dacon, Jamell, Doko, Rei, Jayakody, Thilani B, Jeffery, Hannah R, Kelly, Nathan, Manousidaki, Andriana, Parks, Hannah M, Roggenkamp, Emily M, Schumacher, Ally M, Yang, Jiaxin, Percival, Sarah, Pardo, Jeremy, Husbands, Aman Y, Krishnan, Arjun, Montgomery, Beronda L, Munch, Elizabeth, Thompson, Addie M, Rougon-Cardoso, Alejandra, Chitwood, Daniel H, VanBuren, Robert

“…Since they emerged approximately 125 million years ago, flowering plants have evolved to dominate the terrestrial landscape and survive in the most…”
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Current challenges and future of agricultural genomes to phenomes in the USA by Tuggle, Christopher K, Clarke, Jennifer L, Murdoch, Brenda M, Lyons, Eric, Scott, Nicole M, Beneš, Bedrich, Campbell, Jacqueline D, Chung, Henri, Daigle, Courtney L, Das Choudhury, Sruti, Dekkers, Jack C M, Dórea, Joao R R, Ertl, David S, Feldman, Max, Fragomeni, Breno O, Fulton, Janet E, Guadagno, Carmela R, Hagen, Darren E, Hess, Andrew S, Kramer, Luke M, Lawrence-Dill, Carolyn J, Lipka, Alexander E, Lübberstedt, Thomas, McCarthy, Fiona M, McKay, Stephanie D, Murray, Seth C, Riggs, Penny K, Rowan, Troy N, Sheehan, Moira J, Steibel, Juan P, Thompson, Addie M, Thornton, Kara J, Van Tassell, Curtis P, Schnable, Patrick S

“…Dramatic improvements in measuring genetic variation across agriculturally relevant populations (genomics) must be matched by improvements in identifying and…”
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SNP-Based Genome-Wide Association Mapping of Pollen Viability Under Heat Stress in Tropical Zea mays L. Inbred Lines by Ahmed, Zubair, Khalid, Maria, Ghafoor, Abdul, Shah, Muhammad Kausar Nawaz, Raja, Ghazala Kaukab, Rana, Rashid Mehmood, Mahmood, Tahir, Thompson, Addie M

“…Global environmental changes with more extreme episodes of heat waves are major threats to agricultural productivity. Heat stress in spring affects the…”
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Automation of leaf counting in maize and sorghum using deep learning by Miao, Chenyong, Guo, Alice, Thompson, Addie M., Yang, Jinliang, Ge, Yufeng, Schnable, James C.

“…Leaf number and leaf emergence rate are phenotypes of interest to plant breeders, plant geneticists, and crop modelers. Counting the extant leaves of an…”
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Germplasm Architecture Revealed through Chromosomal Effects for Quantitative Traits in Maize by Bernardo, Rex, Thompson, Addie M.

“…Core Ideas Germplasm architecture reveals the distribution of favorable alleles in germplasm. Germplasm architecture for quantitative traits in maize is…”
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Advances in plant phenomics: From data and algorithms to biological insights by Kenchanmane Raju, Sunil K., Thompson, Addie M., Schnable, James C.

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Diversity of maize shoot apical meristem architecture and its relationship to plant morphology by Thompson, Addie M, Yu, Jianming, Timmermans, Marja C P, Schnable, Patrick, Crants, James C, Scanlon, Michael J, Muehlbauer, Gary J

“…The shoot apical meristem contains a pool of undifferentiated stem cells and controls initiation of all aerial plant organs. In maize (Zea mays), leaves are…”
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PyBrOpS: a Python package for breeding program simulation and optimization for multi-objective breeding by Shrote, Robert Z, Thompson, Addie M

“…Abstract Plant breeding is a complex endeavor that is almost always multi-objective in nature. In recent years, stochastic breeding simulations have been used…”
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Cross-species predictive modeling reveals conserved drought responses between maize and sorghum by Pardo, Jeremy, Wai, Ching Man, Harman, Maxwell, Nguyen, Annie, Kremling, Karl A, Romay, Maria Cinta, Lepak, Nicholas, Bauerle, Taryn L, Buckler, Edward S, Thompson, Addie M, VanBuren, Robert

“…Drought tolerance is a highly complex trait controlled by numerous interconnected pathways with substantial variation within and across plant species. This…”
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Population‐level gene expression can repeatedly link genes to functions in maize by Torres‐Rodríguez, J. Vladimir, Li, Delin, Turkus, Jonathan, Newton, Linsey, Davis, Jensina, Lopez‐Corona, Lina, Ali, Waqar, Sun, Guangchao, Mural, Ravi V., Grzybowski, Marcin W., Zamft, Bradley M., Thompson, Addie M., Schnable, James C.

“…SUMMARY Transcriptome‐wide association studies (TWAS) can provide single gene resolution for candidate genes in plants, complementing genome‐wide association…”
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Genetic and Environmental Patterns Underlying Phenotypic Plasticity in Flowering Time and Plant Height in Sorghum by Wei, Jialu, Guo, Tingting, Mu, Qi, Alladassi, Boris M E, Mural, Ravi V, Boyles, Richard E, Hoffmann, Leo, Hayes, Chad M, Sigmon, Brandi, Thompson, Addie M, Salas-Fernandez, Maria G, Rooney, William L, Kresovich, Stephen, Schnable, James C, Li, Xianran, Yu, Jianming

“…Phenotypic plasticity is the property of a genotype to produce different phenotypes under different environmental conditions. Understanding genetic and…”
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Association mapping across a multitude of traits collected in diverse environments in maize by Mural, Ravi V, Sun, Guangchao, Grzybowski, Marcin, Tross, Michael C, Jin, Hongyu, Smith, Christine, Newton, Linsey, Andorf, Carson M, Woodhouse, Margaret R, Thompson, Addie M, Sigmon, Brandi, Schnable, James C

“…Abstract Classical genetic studies have identified many cases of pleiotropy where mutations in individual genes alter many different phenotypes. Quantitative…”
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Genetic control of maize shoot apical meristem architecture by Thompson, Addie M, Crants, James, Schnable, Patrick S, Yu, Jianming, Timmermans, Marja C P, Springer, Nathan M, Scanlon, Michael J, Muehlbauer, Gary J

“…The shoot apical meristem contains a pool of undifferentiated stem cells and generates all above-ground organs of the plant. During vegetative growth, cells…”
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Imitating the “breeder's eye”: Predicting grain yield from measurements of non‐yield traits by Jin, Hongyu, Tross, Michael C., Tan, Ruijuan, Newton, Linsey, Mural, Ravi V., Yang, Jinliang, Thompson, Addie M., Schnable, James C.

“…Abstract Plant breeding relies on information gathered from field trials to select promising new crop varieties for release to farmers and to develop genomic…”
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Association mapping across a multitude of traits collected in diverse environments in maize by Mural, Ravi V., Sun, Guangchao, Grzybowski, Marcin, Tross, Michael C., Jin, Hongyu, Smith, Christine, Newton, Linsey, Andorf, Carson M., Woodhouse, Margaret R., Thompson, Addie M., Sigmon, Brandi, Schnable, James C.

“…Abstract Classical genetic studies have identified many cases of pleiotropy where mutations in individual genes alter many different phenotypes. Quantitative…”
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Shoot Apical Meristem Architecture in Maize: Diversity, Genetic Control, and its Relationship to Adult Plant Morphology by Thompson, Addie M

“…The maize shoot apical meristem (SAM) contains a pool of undifferentiated stem cells that produce all above-ground plant organs. Previous studies of the SAM…”
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Sorghum Biomass Prediction Using Uav-Based Remote Sensing Data and Crop Model Simulation by Masjedi, Ali, Zhao, Jieqiong, Thompson, Addie M., Yang, Kai-Wei, Flatt, John E., Crawford, Melba M., Ebert, David S., Tuinstra, Mitchell R., Hammer, Graeme, Chapman, Scott

“…Accurate phenotyping with unmanned aerial vehicles is a remote sensing application that has received recent attention as plant breeders seek to automate the…”
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Detecting and Counting Panicles in Sorghum Images by Olsen, Peder A., Natesan Ramamurthy, Karthikeyan, Ribera, Javier, Chen, Yuhao, Thompson, Addie M., Luss, Ronny, Tuinstra, Mitch, Abe, Naoki

“…Phenotyping, the process of measuring plant traits, plays a central role in plant breeding. However, traditional approaches are labor-intensive,…”
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Multitask Learning using Task Clustering with Applications to Predictive Modeling and GWAS of Plant Varieties by Yu, Ming, Thompson, Addie M, Ramamurthy, Karthikeyan Natesan, Yang, Eunho, Lozano, Aurélie C

“…Inferring predictive maps between multiple input and multiple output variables or tasks has innumerable applications in data science. Multi-task learning…”
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