Search Results - "The ISME Journal"

Environmental stress destabilizes microbial networks by Hernandez, Damian J., David, Aaron S., Menges, Eric S., Searcy, Christopher A., Afkhami, Michelle E.

“…Environmental stress is increasing worldwide, yet we lack a clear picture of how stress disrupts the stability of microbial communities and the ecosystem…”
Get full text

Erosion reduces soil microbial diversity, network complexity and multifunctionality by Qiu, Liping, Zhang, Qian, Zhu, Hansong, Reich, Peter B., Banerjee, Samiran, van der Heijden, Marcel G. A., Sadowsky, Michael J., Ishii, Satoshi, Jia, Xiaoxu, Shao, Mingan, Liu, Baoyuan, Jiao, Huan, Li, Haiqiang, Wei, Xiaorong

“…While soil erosion drives land degradation, the impact of erosion on soil microbial communities and multiple soil functions remains unclear. This hinders our…”
Get full text

Balance between community assembly processes mediates species coexistence in agricultural soil microbiomes across eastern China by Jiao, Shuo, Yang, Yunfeng, Xu, Yiqin, Zhang, Jie, Lu, Yahai

“…Revealing the linkages between community assembly and species coexistence, which is crucial for the understanding of ecosystem diversity and functioning, is a…”
Get full text

Exact sequence variants should replace operational taxonomic units in marker-gene data analysis by Callahan, Benjamin J, McMurdie, Paul J, Holmes, Susan P

“…Recent advances have made it possible to analyze high-throughput marker-gene sequencing data without resorting to the customary construction of molecular…”
Get full text

dRep: a tool for fast and accurate genomic comparisons that enables improved genome recovery from metagenomes through de-replication by Olm, Matthew R, Brown, Christopher T, Brooks, Brandon, Banfield, Jillian F

“…The number of microbial genomes sequenced each year is expanding rapidly, in part due to genome-resolved metagenomic studies that routinely recover hundreds of…”
Get full text

Long-term nutrient inputs shift soil microbial functional profiles of phosphorus cycling in diverse agroecosystems by Dai, Zhongmin, Liu, Guofei, Chen, Huaihai, Chen, Chengrong, Wang, Jingkuan, Ai, Shaoying, Wei, Dan, Li, Daming, Ma, Bin, Tang, Caixian, Brookes, Philip C., Xu, Jianming

“…Microorganisms play an important role in soil phosphorus (P) cycling and regulation of P availability in agroecosystems. However, the responses of the…”
Get full text

Soil pH mediates the balance between stochastic and deterministic assembly of bacteria by Tripathi, Binu M., Stegen, James C., Kim, Mincheol, Dong, Ke, Adams, Jonathan M., Lee, Yoo Kyung

“…Little is known about the factors affecting the relative influences of stochastic and deterministic processes that govern the assembly of microbial communities…”
Get full text

Disease-induced assemblage of a plant-beneficial bacterial consortium by Berendsen, Roeland L., Vismans, Gilles, Yu, Ke, Song, Yang, de Jonge, Ronnie, Burgman, Wilco P., Burmølle, Mette, Herschend, Jakob, Bakker, Peter A. H. M., Pieterse, Corné M. J.

“…Disease suppressive soils typically develop after a disease outbreak due to the subsequent assembly of protective microbiota in the rhizosphere. The role of…”
Get full text

Soil microbial diversity–biomass relationships are driven by soil carbon content across global biomes by Bastida, Felipe, Eldridge, David J., García, Carlos, Kenny Png, G., Bardgett, Richard D., Delgado-Baquerizo, Manuel

“…The relationship between biodiversity and biomass has been a long standing debate in ecology. Soil biodiversity and biomass are essential drivers of ecosystem…”
Get full text

Bacillus velezensis stimulates resident rhizosphere Pseudomonas stutzeri for plant health through metabolic interactions by Sun, Xinli, Xu, Zhihui, Xie, Jiyu, Hesselberg-Thomsen, Viktor, Tan, Taimeng, Zheng, Daoyue, Strube, Mikael L., Dragoš, Anna, Shen, Qirong, Zhang, Ruifu, Kovács, Ákos T.

“…Trophic interactions play a central role in driving microbial community assembly and function. In gut or soil ecosystems, successful inoculants are always…”
Get full text

Distinct patterns and processes of abundant and rare eukaryotic plankton communities following a reservoir cyanobacterial bloom by Xue, Yuanyuan, Chen, Huihuang, Yang, Jun R., Liu, Min, Huang, Bangqin, Yang, Jun

“…Plankton communities normally consist of few abundant and many rare species, yet little is known about the ecological role of rare planktonic eukaryotes. Here…”
Get full text

Global negative effects of nitrogen deposition on soil microbes by Zhang, Tian’an, Chen, Han Y. H., Ruan, Honghua

“…Soil microbes comprise a large portion of the genetic diversity on Earth and influence a large number of important ecosystem processes. Increasing atmospheric…”
Get full text

Disruption of Firmicutes and Actinobacteria abundance in tomato rhizosphere causes the incidence of bacterial wilt disease by Lee, Sang-Moo, Kong, Hyun Gi, Song, Geun Cheol, Ryu, Choong-Min

“…Enrichment of protective microbiota in the rhizosphere facilitates disease suppression. However, how the disruption of protective rhizobacteria affects disease…”
Get full text

Agricultural intensification reduces microbial network complexity and the abundance of keystone taxa in roots by Banerjee, Samiran, Walder, Florian, Büchi, Lucie, Meyer, Marcel, Held, Alain Y., Gattinger, Andreas, Keller, Thomas, Charles, Raphael, van der Heijden, Marcel G. A.

“…Root-associated microbes play a key role in plant performance and productivity, making them important players in agroecosystems. So far, very few studies have…”
Get full text

Uncultivated microbes in need of their own taxonomy by Konstantinidis, Konstantinos T, Rosselló-Móra, Ramon, Amann, Rudolf

“…The great majority of microbial species remains uncultured, severely limiting their taxonomic characterization and thus communication among scientists…”
Get full text

Chlorine disinfection promotes the exchange of antibiotic resistance genes across bacterial genera by natural transformation by Jin, Min, Liu, Lu, Wang, Da-ning, Yang, Dong, Liu, Wei-li, Yin, Jing, Yang, Zhong-wei, Wang, Hua-ran, Qiu, Zhi-gang, Shen, Zhi-qiang, Shi, Dan-yang, Li, Hai-bei, Guo, Jian-hua, Li, Jun-wen

“…Chlorine disinfection to drinking water plays an important role in preventing and controlling waterborne disease outbreaks globally. Nevertheless, little is…”
Get full text

Novel phosphate-solubilizing bacteria enhance soil phosphorus cycling following ecological restoration of land degraded by mining by Liang, Jie-Liang, Liu, Jun, Jia, Pu, Yang, Tao-tao, Zeng, Qing-wei, Zhang, Sheng-chang, Liao, Bin, Shu, Wen-sheng, Li, Jin-tian

“…Little is known about the changes in soil microbial phosphorus (P) cycling potential during terrestrial ecosystem management and restoration, although much…”
Get full text

Defining the role of Parasutterella, a previously uncharacterized member of the core gut microbiota by Ju, Tingting, Kong, Ji Yoon, Stothard, Paul, Willing, Benjamin P.

“…The genus of Parasutterella has been defined as a core component of the human and mouse gut microbiota, and has been correlated with various health outcomes…”
Get full text

Defining trait-based microbial strategies with consequences for soil carbon cycling under climate change by Malik, Ashish A., Martiny, Jennifer B. H., Brodie, Eoin L., Martiny, Adam C., Treseder, Kathleen K., Allison, Steven D.

“…Microorganisms are critical in terrestrial carbon cycling because their growth, activity and interactions with the environment largely control the fate of…”
Get full text

Linking bacterial community composition to soil salinity along environmental gradients by Rath, Kristin M., Fierer, Noah, Murphy, Daniel V., Rousk, Johannes

“…Salinization is recognized as a threat to soil fertility worldwide. A challenge in understanding the effects of salinity on soil microbial communities is the…”
Get full text