Search Results - "Tetsuo Shibuya"

Proper colorability of segment intersection graphs by Barish, Robert D., Shibuya, Tetsuo

“…We consider the vertex proper coloring problem for highly restricted instances of geometric intersection graphs of line segments embedded in the plane…”
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Application-Oriented Succinct Data Structures for Big Data by Shibuya, Tetsuo

“…A data structure is called succinct if its asymptotical space requirement matches the original data size. The development of succinct data structures is an…”
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Genetic algorithm-based feature selection with manifold learning for cancer classification using microarray data by Wang, Zixuan, Zhou, Yi, Takagi, Tatsuya, Song, Jiangning, Tian, Yu-Shi, Shibuya, Tetsuo

“…Microarray data have been widely utilized for cancer classification. The main characteristic of microarray data is "large p and small n" in that data contain a…”
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Nanopore basecalling from a perspective of instance segmentation by Zhang, Yao-Zhong, Akdemir, Arda, Tremmel, Georg, Imoto, Seiya, Miyano, Satoru, Shibuya, Tetsuo, Yamaguchi, Rui

“…Nanopore sequencing is a rapidly developing third-generation sequencing technology, which can generate long nucleotide reads of molecules within a portable…”
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Whole-genome mutational landscape of liver cancers displaying biliary phenotype reveals hepatitis impact and molecular diversity by Fujimoto, Akihiro, Furuta, Mayuko, Shiraishi, Yuichi, Gotoh, Kunihito, Kawakami, Yoshiiku, Arihiro, Koji, Nakamura, Toru, Ueno, Masaki, Ariizumi, Shun-ichi, Hai Nguyen, Ha, Shigemizu, Daichi, Abe, Tetsuo, Boroevich, Keith A., Nakano, Kaoru, Sasaki, Aya, Kitada, Rina, Maejima, Kazihiro, Yamamoto, Yujiro, Tanaka, Hiroko, Shibuya, Tetsuo, Shibata, Tatsuhiro, Ojima, Hidenori, Shimada, Kazuaki, Hayami, Shinya, Shigekawa, Yoshinobu, Aikata, Hiroshi, Ohdan, Hideki, Marubashi, Shigeru, Yamada, Terumasa, Kubo, Michiaki, Hirano, Satoshi, Ishikawa, Osamu, Yamamoto, Masakazu, Yamaue, Hiroki, Chayama, Kazuaki, Miyano, Satoru, Tsunoda, Tatsuhiko, Nakagawa, Hidewaki

“…Intrahepatic cholangiocarcinoma and combined hepatocellular cholangiocarcinoma show varying degrees of biliary epithelial differentiation, which can be defined…”
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Efficient Differentially Private Methods for a Transmission Disequilibrium Test in Genome Wide Association Studies by Yamamoto, Akito, Shibuya, Tetsuo

“…To achieve the provision of personalized medicine, it is very important to investigate the relationship between diseases and human genomes. For this purpose,…”
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More practical differentially private publication of key statistics in GWAS by Yamamoto, Akito, Shibuya, Tetsuo

“…Analyses of datasets that contain personal genomic information are very important for revealing associations between diseases and genomes. Genome-wide…”
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Integrated analysis of whole genome and transcriptome sequencing reveals diverse transcriptomic aberrations driven by somatic genomic changes in liver cancers by Shiraishi, Yuichi, Fujimoto, Akihiro, Furuta, Mayuko, Tanaka, Hiroko, Chiba, Ken-ichi, Boroevich, Keith A, Abe, Tetsuo, Kawakami, Yoshiiku, Ueno, Masaki, Gotoh, Kunihito, Ariizumi, Shun-ichi, Shibuya, Tetsuo, Nakano, Kaoru, Sasaki, Aya, Maejima, Kazuhiro, Kitada, Rina, Hayami, Shinya, Shigekawa, Yoshinobu, Marubashi, Shigeru, Yamada, Terumasa, Kubo, Michiaki, Ishikawa, Osamu, Aikata, Hiroshi, Arihiro, Koji, Ohdan, Hideki, Yamamoto, Masakazu, Yamaue, Hiroki, Chayama, Kazuaki, Tsunoda, Tatsuhiko, Miyano, Satoru, Nakagawa, Hidewaki

“…Recent studies applying high-throughput sequencing technologies have identified several recurrently mutated genes and pathways in multiple cancer genomes…”
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Revealing phenotype-associated functional differences by genome-wide scan of ancient haplotype blocks by Onuki, Ritsuko, Yamaguchi, Rui, Shibuya, Tetsuo, Kanehisa, Minoru, Goto, Susumu

“…Genome-wide scans for positive selection have become important for genomic medicine, and many studies aim to find genomic regions affected by positive…”
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Detection of APC mosaicism by next-generation sequencing in an FAP patient by Yamaguchi, Kiyoshi, Komura, Mitsuhiro, Yamaguchi, Rui, Imoto, Seiya, Shimizu, Eigo, Kasuya, Shinichi, Shibuya, Tetsuo, Hatakeyama, Seira, Takahashi, Norihiko, Ikenoue, Tsuneo, Hata, Keisuke, Tsurita, Giichiro, Shinozaki, Masaru, Suzuki, Yutaka, Sugano, Sumio, Miyano, Satoru, Furukawa, Yoichi

“…Familial adenomatous polyposis (FAP) of the colon is characterized by multiple polyps in the intestine and extra-colonic manifestations. Most FAP cases are…”
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Searching protein three-dimensional structures in faster than linear time by Shibuya, Tetsuo

“…Searching for similar structures from a three-dimensional (3-D) structure database of proteins is one of the most important problems in post-genomic…”
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Reevaluation of Human Cytomegalovirus Coding Potential by Murphy, Eain, Rigoutsos, Isidore, Shibuya, Tetsuo, Shenk, Thomas E.

“…The Bio-Dictionary-based Gene Finder was used to reassess the coding potential of the AD169 laboratory strain of human cytomegalovirus and sequences in the…”
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Searching protein 3-D structures in linear time by Shibuya, Tetsuo

“…One of the most important issues in the post-genomic molecular biology is the analysis of protein three-dimensional (3-D) structures, and searching over the…”
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Arapan-S: a fast and highly accurate whole-genome assembly software for viruses and small genomes by Sahli, Mohammed, Shibuya, Tetsuo

“…Genome assembly is considered to be a challenging problem in computational biology, and has been studied extensively by many researchers. It is extremely…”
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LB3D: a protein three-dimensional substructure search program based on the lower bound of a root mean square deviation value by Terashi, Genki, Shibuya, Tetsuo, Takeda-Shitaka, Mayuko

“…Searching for protein structure-function relationships using three-dimensional (3D) structural coordinates represents a fundamental approach for determining…”
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Electron microscopic structures, serum resistance, and plasmid restructuring of New Delhi metallo-β-lactamase-1 (NDM-1)-producing ST42 Klebsiella pneumoniae emerging in Japan by Yamamoto, Tatsuo, Takano, Tomomi, Hung, Wei-Chun, Higuchi, Wataru, Iwao, Yasuhisa, Khokhlova, Olga, Reva, Ivan, Fusegawa, Takehito, Shibuya, Tetsuo

“…Abstract Enterobacteriaceae , carrying the New Delhi metallo-β-lactamase-1 (NDM-1) gene ( blaNDM-1 ), have emerged and posed a threat since 2006. In Japan,…”
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Preface for the Special Issue on the Project “Foundation of Innovative Algorithms for Big Data” by Katoh, Naoki, Higashikawa, Yuya, Ito, Hiro, Kataoka, Shun, Kida, Takuya, Saitoh, Toshiki, Shibuya, Tetsuo, Tanaka, Kazuyuki, Uno, Yushi

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Serum total bilirubin elevation is a predictor of the clinicopathological severity of acute appendicitis by Nomura, Satoshi, Watanabe, Masanori, Komine, Osamu, Shioya, Takeshi, Toyoda, Tetsutaka, Bou, Hideki, Shibuya, Tetsuo, Suzuki, Hideyuki, Uchida, Eiji

“…Purpose Elevation of the serum total bilirubin (STB) level not stemming from hepatic dysfunction or biliary obstruction may be seen in cases of acute…”
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Generalization of a suffix tree for RNA structural pattern matching by SHIBUYA, Tetsuo

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Population model-based inter-diplotype similarity measure for accurate diplotype clustering by Onuki, Ritsuko, Yamada, Ryo, Yamaguchi, Rui, Kanehisa, Minoru, Shibuya, Tetsuo

“…Classification of the individuals' genotype data is important in various kinds of biomedical research. There are many sophisticated clustering algorithms, but…”
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