Search Results - "Telles, Guilherme P."

InteractiVenn: a web-based tool for the analysis of sets through Venn diagrams by Heberle, Henry, Meirelles, Gabriela Vaz, da Silva, Felipe R, Telles, Guilherme P, Minghim, Rosane

“…Set comparisons permeate a large number of data analysis workflows, in particular workflows in biological sciences. Venn diagrams are frequently employed for…”
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External memory BWT and LCP computation for sequence collections with applications by Egidi, Lavinia, Louza, Felipe A, Manzini, Giovanni, Telles, Guilherme P

“…Sequencing technologies produce larger and larger collections of biosequences that have to be stored in compressed indices supporting fast search operations…”
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Metagenomic analysis of a tropical composting operation at the são paulo zoo park reveals diversity of biomass degradation functions and organisms by Martins, Layla Farage, Antunes, Luciana Principal, Pascon, Renata C, de Oliveira, Julio Cezar Franco, Digiampietri, Luciano A, Barbosa, Deibs, Peixoto, Bruno Malveira, Vallim, Marcelo A, Viana-Niero, Cristina, Ostroski, Eric H, Telles, Guilherme P, Dias, Zanoni, da Cruz, João Batista, Juliano, Luiz, Verjovski-Almeida, Sergio, da Silva, Aline Maria, Setubal, João Carlos

“…Composting operations are a rich source for prospection of biomass degradation enzymes. We have analyzed the microbiomes of two composting samples collected in…”
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CellNetVis: a web tool for visualization of biological networks using force-directed layout constrained by cellular components by Heberle, Henry, Carazzolle, Marcelo Falsarella, Telles, Guilherme P, Meirelles, Gabriela Vaz, Minghim, Rosane

“…The advent of "omics" science has brought new perspectives in contemporary biology through the high-throughput analyses of molecular interactions, providing…”
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Live neighbor-joining by Telles, Guilherme P, Araújo, Graziela S, Walter, Maria E M T, Brigido, Marcelo M, Almeida, Nalvo F

“…In phylogenetic reconstruction the result is a tree where all taxa are leaves and internal nodes are hypothetical ancestors. In a live phylogeny, both…”
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gsufsort: constructing suffix arrays, LCP arrays and BWTs for string collections by Louza, Felipe A, Telles, Guilherme P, Gog, Simon, Prezza, Nicola, Rosone, Giovanna

“…The construction of a suffix array for a collection of strings is a fundamental task in Bioinformatics and in many other applications that process strings…”
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Semantic Wordification of Document Collections by Paulovich, Fernando V., Toledo, Franklina M. B., Telles, Guilherme P., Minghim, Rosane, Nonato, Luis Gustavo

“…Word clouds have become one of the most widely accepted visual resources for document analysis and visualization, motivating the development of several methods…”
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Generalized enhanced suffix array construction in external memory by Louza, Felipe A, Telles, Guilherme P, Hoffmann, Steve, Ciferri, Cristina D A

“…Suffix arrays, augmented by additional data structures, allow solving efficiently many string processing problems. The external memory construction of the…”
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Graphs from Features: Tree-Based Graph Layout for Feature Analysis by Minghim, Rosane, Huancapaza, Liz, Artur, Erasmo, Telles, Guilherme P., Belizario, Ivar V.

“…Feature Analysis has become a very critical task in data analysis and visualization. Graph structures are very flexible in terms of representation and may…”
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Chemical Elicitors Induce Rare Bioactive Secondary Metabolites in Deep-Sea Bacteria under Laboratory Conditions by de Felício, Rafael, Ballone, Patricia, Bazzano, Cristina Freitas, Alves, Luiz F G, Sigrist, Renata, Infante, Gina Polo, Niero, Henrique, Rodrigues-Costa, Fernanda, Fernandes, Arthur Zanetti Nunes, Tonon, Luciane A C, Paradela, Luciana S, Costa, Renna Karoline Eloi, Dias, Sandra Martha Gomes, Dessen, Andréa, Telles, Guilherme P, da Silva, Marcus Adonai Castro, Lima, Andre Oliveira de Souza, Trivella, Daniela Barretto Barbosa

“…Bacterial genome sequencing has revealed a vast number of novel biosynthetic gene clusters (BGC) with potential to produce bioactive natural products. However,…”
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Detection and identification of Xanthomonas pathotypes associated with citrus diseases using comparative genomics and multiplex PCR by Fonseca, Natasha P, Felestrino, Érica B, Caneschi, Washington L, Sanchez, Angélica B, Cordeiro, Isabella F, Lemes, Camila G C, Assis, Renata A B, Carvalho, Flávia M S, Ferro, Jesus A, Varani, Alessandro M, Belasque, José, Setubal, Joao C, Telles, Guilherme P, Aguena, Deiviston S, Almeida, Nalvo F, Moreira, Leandro M

“…In cultures, three species of are known to cause distinct diseases. subsp. patothype A, subsp. pathotypes B and C, and subsp. , are the causative agents of…”
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Comparative genomics with succinct colored de Bruijn graphs by Ramos, Lucas P., Louza, Felipe A., Telles, Guilherme P.

“…DNA technologies have evolved significantly in the past years enabling the sequencing of a large number of genomes in a short time. Nevertheless, the…”
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NP3 MS Workflow: An Open-Source Software System to Empower Natural Product-Based Drug Discovery Using Untargeted Metabolomics by Bazzano, Cristina F., de Felicio, Rafael, Alves, Luiz Fernando Giolo, Costa, Jonas Henrique, Ortega, Raquel, Vieira, Bruna Domingues, Morais-Urano, Raquel Peres, Furtado, Luciana Costa, Ferreira, Everton L. F., Gubiani, Juliana R., Berlinck, Roberto G. S., Costa-Lotufo, Leticia V., Telles, Guilherme P., B. B. Trivella, Daniela

“…Natural products (or specialized metabolites) are historically the main source of new drugs. However, the current drug discovery pipelines require…”
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NP 3 MS Workflow: An Open-Source Software System to Empower Natural Product-Based Drug Discovery Using Untargeted Metabolomics by Bazzano, Cristina F, de Felicio, Rafael, Alves, Luiz Fernando Giolo, Costa, Jonas Henrique, Ortega, Raquel, Vieira, Bruna Domingues, Morais-Urano, Raquel Peres, Furtado, Luciana Costa, Ferreira, Everton L F, Gubiani, Juliana R, Berlinck, Roberto G S, Costa-Lotufo, Leticia V, Telles, Guilherme P, B B Trivella, Daniela

“…Natural products (or specialized metabolites) are historically the main source of new drugs. However, the current drug discovery pipelines require…”
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Typic: A Practical and Robust Tool to Rank Proteotypic Peptides for Targeted Proteomics by Pauletti, Bianca A., Granato, Daniela C., M. Carnielli, Carolina, Câmara, Guilherme A., Normando, Ana Gabriela C., Telles, Guilherme P., Leme, Adriana F. Paes

“…The selection of a suitable proteotypic peptide remains a challenge for designing a targeted quantitative proteomics assay. Although the criteria are…”
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Meta-omics analysis indicates the saliva microbiome and its proteins associated with the prognosis of oral cancer patients by Granato, Daniela C., Neves, Leandro X., Trino, Luciana D., Carnielli, Carolina M., Lopes, Ariane F.B., Yokoo, Sami, Pauletti, Bianca A., Domingues, Romênia R., Sá, Jamile O., Persinoti, Gabriella, Paixão, Douglas A.A., Rivera, César, de Sá Patroni, Fabio M., Tommazetto, Geizecler, Santos-Silva, Alan R., Lopes, Márcio A., de Castro, Gilberto, Brandão, Thaís B., Prado-Ribeiro, Ana Carolina, Squina, Fabio M., Telles, Guilherme P., Paes Leme, Adriana F.

“…Saliva is a biofluid that maintains the health of oral tissues and the homeostasis of oral microbiota. Studies have demonstrated that Oral squamous cell…”
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Mapping Conformational Changes in the Saliva Proteome Potentially Associated with Oral Cancer Aggressiveness by Granato, Daniela C., Carnielli, Carolina M., Trino, Luciana D., Busso-Lopes, Ariane F., Câmara, Guilherme A., Normando, Ana Gabriela C., Filho, Helder V. R., Domingues, Romênia R., Yokoo, Sami, Pauletti, Bianca A., Patroni, Fabio M., Santos-Silva, Alan R., Lopes, Márcio A., Brandão, Thaís Bianca, Prado-Ribeiro, Ana Carolina, Lopes-de Oliveira, Paulo. S., Telles, Guilherme P., Paes Leme, Adriana F.

“…Diverse proteomics-based strategies have been applied to saliva to quantitatively identify diagnostic and prognostic targets for oral cancer. Considering that…”
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Burrows–Wheeler transform and LCP array construction in constant space by Louza, Felipe A., Gagie, Travis, Telles, Guilherme P.

“…In this article we extend the elegant in-place Burrows–Wheeler transform (BWT) algorithm proposed by Crochemore et al. [12]. Our extension is twofold: we first…”
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Improved Similarity Trees and their Application to Visual Data Classification by Paiva, J. G., Florian, L., Pedrini, H., Telles, G., Minghim, R.

“…An alternative form to multidimensional projections for the visual analysis of data represented in multidimensional spaces is the deployment of similarity…”
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The Visual SuperTree: similarity-based multi-scale visualization by da Silva, Renato R. O., Paiva, José Gustavo S., Telles, Guilherme P., Zampieri, Carlos E. A., Rolli, Fábio P., Minghim, Rosane

“…Similarity-based exploration of multi-dimensional data sets is a difficult task, in which most techniques do not perform well with large data sets,…”
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