Search Results - "Taylor, Chris F."

Data standards for Omics data: the basis of data sharing and reuse by Chervitz, Stephen A, Deutsch, Eric W, Field, Dawn, Parkinson, Helen, Quackenbush, John, Rocca-Serra, Phillipe, Sansone, Susanna-Assunta, Stoeckert, Jr, Christian J, Taylor, Chris F, Taylor, Ronald, Ball, Catherine A

“…To facilitate sharing of Omics data, many groups of scientists have been working to establish the relevant data standards. The main components of data sharing…”
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Survey-based naming conventions for use in OBO Foundry ontology development by Schober, Daniel, Smith, Barry, Lewis, Suzanna E, Kusnierczyk, Waclaw, Lomax, Jane, Mungall, Chris, Taylor, Chris F, Rocca-Serra, Philippe, Sansone, Susanna-Assunta

“…A wide variety of ontologies relevant to the biological and medical domains are available through the OBO Foundry portal, and their number is growing rapidly…”
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Guidelines for reporting the use of mass spectrometry informatics in proteomics by Taylor, Chris F, Vandenbrouck, Yves, Barkovich, Robert, Seymour, Sean L, Julian, Randall K, Binz, Pierre-Alain, Creasy, David, Horn, David M, Beavis, Ronald C

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The Functional Genomics Experiment model (FuGE): an extensible framework for standards in functional genomics by Pizarro, Angel, Jones, Andrew R, Miller, Michael, Aebersold, Ruedi, Apweiler, Rolf, Ball, Catherine A, Brazma, Alvis, DeGreef, James, Hardy, Nigel, Hermjakob, Henning, Hubbard, Simon J, Hussey, Peter, Igra, Mark, Jenkins, Helen, Julian, Randall K, Laursen, Kent, Oliver, Stephen G, Paton, Norman W, Sansone, Susanna-Assunta, Sarkans, Ugis, Stoeckert, Christian J, Taylor, Chris F, Whetzel, Patricia L, White, Joseph A, Spellman, Paul

“…The Functional Genomics Experiment data model (FuGE) has been developed to facilitate convergence of data standards for high-throughput, comprehensive analyses…”
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The minimum information about a proteomics experiment (MIAPE) by Taylor, Chris F, Paton, Norman W, Lilley, Kathryn S, Binz, Pierre-Alain, Julian, Randall K, Jones, Andrew R, Zhu, Weimin, Apweiler, Rolf, Aebersold, Ruedi, Deutsch, Eric W, Dunn, Michael J, Heck, Albert J R, Leitner, Alexander, Macht, Marcus, Mann, Matthias, Martens, Lennart, Neubert, Thomas A, Patterson, Scott D, Ping, Peipei, Seymour, Sean L, Souda, Puneet, Tsugita, Akira, Vandekerckhove, Joel, Vondriska, Thomas M, Whitelegge, Julian P, Wilkins, Marc R, Xenarios, Ioannnis, Yates, John R, Hermjakob, Henning

“…Both the generation and the analysis of proteomics data are now widespread, and high-throughput approaches are commonplace. Protocols continue to increase in…”
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PRIDE: a public repository of protein and peptide identifications for the proteomics community by Jones, Philip, Côté, Richard G, Martens, Lennart, Quinn, Antony F, Taylor, Chris F, Derache, William, Hermjakob, Henning, Apweiler, Rolf

“…PRIDE, the 'PRoteomics IDEntifications database' (http://www.ebi.ac.uk/pride) is a database of protein and peptide identifications that have been described in…”
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Omics Data Sharing by Field, Dawn, Sansone, Susanna-Assunta, Collis, Amanda, Booth, Tim, Dukes, Peter, Gregurick, Susan K., Kennedy, Karen, Kolar, Patrik, Kolker, Eugene, Maxon, Mary, Millard, Siân, Mugabushaka, Alexis-Michel, Perrin, Nicola, Remade, Jacques E., Remington, Karin, Rocca-Serra, Philippe, Taylor, Chris F., Thorley, Mark, Tiwari, Bela, Wilbanks, John

“…Data sharing, and the good annotation practices it depends on, must become part of the fabric of daily research for researchers and funders. Development of…”
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A common open representation of mass spectrometry data and its application to proteomics research by Aebersold, Ruedi, Pedrioli, Patrick G A, Eng, Jimmy K, Hubley, Robert, Vogelzang, Mathijs, Deutsch, Eric W, Raught, Brian, Pratt, Brian, Nilsson, Erik, Angeletti, Ruth H, Apweiler, Rolf, Cheung, Kei, Costello, Catherine E, Hermjakob, Henning, Huang, Sequin, Julian, Randall K, Kapp, Eugene, McComb, Mark E, Oliver, Stephen G, Omenn, Gilbert, Paton, Norman W, Simpson, Richard, Smith, Richard, Taylor, Chris F, Zhu, Weimin

“…A broad range of mass spectrometers are used in mass spectrometry (MS)-based proteomics research. Each type of instrument possesses a unique design, data…”
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Minimum Reporting Requirements for Proteomics: A MIAPE Primer by Taylor, Chris F.

“…Amongst other functions, the Human Proteome Organization's Proteomics Standards Initiative (HUPO PSI) facilitates the generation by the proteomics community of…”
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Guidelines for reporting the use of mass spectrometry in proteomics by Taylor, Chris F, Lilley, Kathryn, Resing, Kathryn, Hühmer, Andreas, Macht, Marcus, Raso, Roberto, Aebersold, Ruedi, Müller, Dieter, Neubert, Thomas A, Nickson, Janice, Binz, Pierre-Alain, Tsugita, Akira, Zeng, Rong, Affolter, Michel, Xenarios, Ioannis, Julian, Randall K, Seymour, Sean L, Deutsch, Eric W, Kussmann, Martin, Mann, Matthias, Patterson, Scott D, Barkovich, Robert, Horn, David M

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A systematic approach to modeling, capturing, and disseminating proteomics experimental data by Oliver, Stephen G, Taylor, Chris F, Paton, Norman W, Garwood, Kevin L, Kirby, Paul D, Stead, David A, Yin, Zhikang, Deutsch, Eric W, Selway, Laura, Walker, Janet, Riba-Garcia, Isabel, Mohammed, Shabaz, Deery, Michael J, Howard, Julie A, Dunkley, Tom, Aebersold, Ruedi, Kell, Douglas B, Lilley, Kathryn S, Roepstorff, Peter, Yates, John R, Brass, Andy, Brown, Alistair J.P, Cash, Phil, Gaskell, Simon J, Hubbard, Simon J

“…Both the generation and the analysis of proteome data are becoming increasingly widespread, and the field of proteomics is moving incrementally toward…”
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Minimum Reporting Requirements for Proteomics: A MIAPE Primer by Taylor, Chris F.

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Standards for reporting bioscience data: a forward look by Taylor, Chris F.

“…Groups representing a number of domains in the life sciences have been developing specifications and resources for the description and transmission of data,…”
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Debunking minimum information myths: one hat need not fit all by Orchard, Sandra, Taylor, Chris F

“…A recent meeting report published in this journal suggests that the work of the various bodies attempting to improve the quality of articles describing the…”
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Guidelines for reporting the use of gel electrophoresis in proteomics by Day, Billy W, Berth, Matthias, Lemkin, Peter F, Stead, David A, Jones, Andrew R, Khan, Alamgir, Prime, John E, Pisano, Michael R, Friedman, David B, Morris, Nicholas J, Taylor, Chris F, Gibson, Frank, Hoogland, Christine, Lamond, Angus I, Lilley, Kathryn S, Garland, Donita, Minden, Jonathan, Gutstein, Howard B, Anderson, Leigh, Voshol, Hans, Cash, Phil, Babnigg, Gyorgy, Binz, Pierre-Alain, Borthwick, Andy, Klose, Joachim, Rabilloud, Thierry, Wipat, Anil, Baker, Mark, Paton, Norman W, Jones, Neil A

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roadmap for the establishment of standard data exchange structures for metabolomics by Hardy, Nigel W, Taylor, Chris F

“…This briefing lays out the initial objectives and intent of the Data Exchange Working Group of the Metabolomics Standards Initiative (MSI), which operates…”
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Guidelines for reporting the use of capillary electrophoresis in proteomics by Neusüß, Christian, Quaglia, Milena, Taylor, Chris F, Smyth, W Franklin, Smallshaw, Lance, Barbas, Coral, McClean, Stephen, Rapp, Erdmann, Huang, Lihua, Akashi, Satoko, Lau, Wendy, Perrett, David, Smith, Norman W, Domann, Paula J, Legido-Quigley, Cristina

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Guidelines for reporting the use of gel image informatics in proteomics by Jones, Andrew R, Hoogland, Christine, O'Gorman, Martin, Bogard, Philippe, Gibson, Frank, Berth, Matthias, Cockell, Simon J, Ekefjärd, Andreas, Forsstrom-Olsson, Ola, Kapferer, Anna, Nilsson, Mattias, Martínez-Bartolomé, Salvador, Albar, Juan Pablo, Echevarría-Zomeño, Sira, Martínez-Gomariz, Montserrat, Joets, Johann, Binz, Pierre-Alain, Taylor, Chris F, Dowsey, Andrew

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The work of the Human Proteome Organisation's Proteomics Standards Initiative (HUPO PSI) by Taylor, Chris F, Hermjakob, Henning, Julian, Jr, Randall K, Garavelli, John S, Aebersold, Ruedi, Apweiler, Rolf

“…This article describes the origins, working practices and various development projects of the HUman Proteome Organisation's Proteomics Standards Initiative…”
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Further Steps in Standardisation Report of the Second Annual Proteomics Standards Initiative Spring Workshop (Siena, Italy 17-20th April 2005) by Orchard, Sandra, Hermjakob, Henning, Taylor, Chris F., Potthast, Frank, Jones, Phil, Zhu, Weimin, Julian Jr, Randall K., Apweiler, Rolf

“…The spring workshop of the HUPO‐PSI convened in Siena to further progress the data standards which are already making an impact on data exchange and deposition…”
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