Search Results - "Tamarit, Daniel"

Asgard archaea shed light on the evolutionary origins of the eukaryotic ubiquitin-ESCRT machinery by Hatano, Tomoyuki, Palani, Saravanan, Papatziamou, Dimitra, Salzer, Ralf, Souza, Diorge P., Tamarit, Daniel, Makwana, Mehul, Potter, Antonia, Haig, Alexandra, Xu, Wenjue, Townsend, David, Rochester, David, Bellini, Dom, Hussain, Hamdi M. A., Ettema, Thijs J. G., Löwe, Jan, Baum, Buzz, Robinson, Nicholas P., Balasubramanian, Mohan

“…The ESCRT machinery, comprising of multiple proteins and subcomplexes, is crucial for membrane remodelling in eukaryotic cells, in processes that include…”
Get full text

RNA-guided RNA silencing by an Asgard archaeal Argonaute by Bastiaanssen, Carolien, Bobadilla Ugarte, Pilar, Kim, Kijun, Finocchio, Giada, Feng, Yanlei, Anzelon, Todd A., Köstlbacher, Stephan, Tamarit, Daniel, Ettema, Thijs J. G., Jinek, Martin, MacRae, Ian J., Joo, Chirlmin, Swarts, Daan C., Wu, Fabai

“…Argonaute proteins are the central effectors of RNA-guided RNA silencing pathways in eukaryotes, playing crucial roles in gene repression and defense against…”
Get full text

Inference and reconstruction of the heimdallarchaeial ancestry of eukaryotes by Eme, Laura, Tamarit, Daniel, Caceres, Eva F., Stairs, Courtney W., De Anda, Valerie, Schön, Max E., Seitz, Kiley W., Dombrowski, Nina, Lewis, William H., Homa, Felix, Saw, Jimmy H., Lombard, Jonathan, Nunoura, Takuro, Li, Wen-Jun, Hua, Zheng-Shuang, Chen, Lin-Xing, Banfield, Jillian F., John, Emily St, Reysenbach, Anna-Louise, Stott, Matthew B., Schramm, Andreas, Kjeldsen, Kasper U., Teske, Andreas P., Baker, Brett J., Ettema, Thijs J. G.

“…In the ongoing debates about eukaryogenesis—the series of evolutionary events leading to the emergence of the eukaryotic cell from prokaryotic…”
Get full text

Functionally Structured Genomes in Lactobacillus kunkeei Colonizing the Honey Crop and Food Products of Honeybees and Stingless Bees by Tamarit, Daniel, Ellegaard, Kirsten M, Wikander, Johan, Olofsson, Tobias, Vásquez, Alejandra, Andersson, Siv G E

“…Lactobacillus kunkeei is the most abundant bacterial species in the honey crop and food products of honeybees. The 16 S rRNA genes of strains isolated from…”
Get full text

Determinism and Contingency Shape Metabolic Complementation in an Endosymbiotic Consortium by Ponce-de-Leon, Miguel, Tamarit, Daniel, Calle-Espinosa, Jorge, Mori, Matteo, Latorre, Amparo, Montero, Francisco, Pereto, Juli

“…Bacterial endosymbionts and their insect hosts establish an intimate metabolic relationship. Bacteria offer a variety of essential nutrients to their hosts,…”
Get full text

Prospective CO2 and CO bioconversion into ectoines using novel microbial platforms by Cantera, Sara, Tamarit, Daniel, Strong, Peter James, Sánchez-Andrea, Irene, Ettema, Thijs J. G., Sousa, Diana Z.

“…Microbial conversion of CO 2 and CO into chemicals is a promising route that can contribute to the cost-effective reduction of anthropogenic green house and…”
Get full text

A closed Candidatus Odinarchaeum chromosome exposes Asgard archaeal viruses by Tamarit, Daniel, Caceres, Eva F., Krupovic, Mart, Nijland, Reindert, Eme, Laura, Robinson, Nicholas P., Ettema, Thijs J. G.

“…Asgard archaea have recently been identified as the closest archaeal relatives of eukaryotes. Their ecology, and particularly their virome, remain enigmatic…”
Get full text

Microbial Diversity and Open Questions about the Deep Tree of Life by Eme, Laura, Tamarit, Daniel

“…Abstract In this perspective, we explore the transformative impact and inherent limitations of metagenomics and single-cell genomics on our understanding of…”
Get full text

Chlamydial contribution to anaerobic metabolism during eukaryotic evolution by Stairs, Courtney W, Dharamshi, Jennah E, Tamarit, Daniel, Eme, Laura, Jørgensen, Steffen L, Spang, Anja, Ettema, Thijs J G

“…The origin of eukaryotes is a major open question in evolutionary biology. Multiple hypotheses posit that eukaryotes likely evolved from a syntrophic…”
Get full text

The emerging view on the origin and early evolution of eukaryotic cells by Vosseberg, Julian, van Hooff, Jolien J. E., Köstlbacher, Stephan, Panagiotou, Kassiani, Tamarit, Daniel, Ettema, Thijs J. G.

“…The origin of the eukaryotic cell, with its compartmentalized nature and generally large size compared with bacterial and archaeal cells, represents a…”
Get full text

Marine Sediments Illuminate Chlamydiae Diversity and Evolution by Dharamshi, Jennah E., Tamarit, Daniel, Eme, Laura, Stairs, Courtney W., Martijn, Joran, Homa, Felix, Jørgensen, Steffen L., Spang, Anja, Ettema, Thijs J.G.

“…The bacterial phylum Chlamydiae is so far composed of obligate symbionts of eukaryotic hosts. Well known for Chlamydiaceae, pathogens of humans and other…”
Get full text

Rethinking microbial symbioses by Tamarit, Daniel, Andersson, Siv G E

Get full text

Description of Asgardarchaeum abyssi gen. nov. spec. nov., a novel species within the class Asgardarchaeia and phylum Asgardarchaeota in accordance with the SeqCode by Tamarit, Daniel, Köstlbacher, Stephan, Appler, Kathryn E., Panagiotou, Kassiani, De Anda, Valerie, Rinke, Christian, Baker, Brett J., Ettema, Thijs J.G.

“…Asgardarchaeota, commonly referred to as Asgard archaea, is a candidatus phylum-rank archaeal clade that includes the closest archaeal relatives of eukaryotes…”
Get full text

Origin and Evolution of the Bartonella Gene Transfer Agent by Tamarit, Daniel, Neuvonen, Minna-Maria, Engel, Philipp, Guy, Lionel, Andersson, Siv G E

“…Gene transfer agents (GTAs) are domesticated bacteriophages that have evolved into molecular machines for the transfer of bacterial DNA. Despite their…”
Get full text

Immunity and other defenses in pea aphids, Acyrthosiphon pisum by Gerardo, Nicole M, Altincicek, Boran, Anselme, Caroline, Atamian, Hagop, Barribeau, Seth M, de Vos, Martin, Duncan, Elizabeth J, Evans, Jay D, Gabaldón, Toni, Ghanim, Murad, Heddi, Adelaziz, Kaloshian, Isgouhi, Latorre, Amparo, Moya, Andres, Nakabachi, Atsushi, Parker, Benjamin J, Pérez-Brocal, Vincente, Pignatelli, Miguel, Rahbé, Yvan, Ramsey, John S, Spragg, Chelsea J, Tamames, Javier, Tamarit, Daniel, Tamborindeguy, Cecilia, Vincent-Monegat, Caroline, Vilcinskas, Andreas

“…Recent genomic analyses of arthropod defense mechanisms suggest conservation of key elements underlying responses to pathogens, parasites and stresses. At the…”
Get full text

The genome of Rhizobiales bacteria in predatory ants reveals urease gene functions but no genes for nitrogen fixation by Neuvonen, Minna-Maria, Tamarit, Daniel, Näslund, Kristina, Liebig, Juergen, Feldhaar, Heike, Moran, Nancy A., Guy, Lionel, Andersson, Siv G. E.

“…Gut-associated microbiota of ants include Rhizobiales bacteria with affiliation to the genus Bartonella . These bacteria may enable the ants to fix atmospheric…”
Get full text

Gypsy Database (GyDB) of mobile genetic elements: release 2.0 by Llorens, Carlos, Futami, Ricardo, Covelli, Laura, Domínguez-Escribá, Laura, Viu, Jose M, Tamarit, Daniel, Aguilar-Rodríguez, Jose, Vicente-Ripolles, Miguel, Fuster, Gonzalo, Bernet, Guillermo P, Maumus, Florian, Munoz-Pomer, Alfonso, Sempere, Jose M, Latorre, Amparo, Moya, Andres

“…This article introduces the second release of the Gypsy Database of Mobile Genetic Elements (GyDB 2.0): a research project devoted to the evolutionary dynamics…”
Get full text

Evolution and postglacial colonization of Seewis hantavirus with Sorex araneus in Finland by Ling, Jiaxin, Smura, Teemu, Tamarit, Daniel, Huitu, Otso, Voutilainen, Liina, Henttonen, Heikki, Vaheri, Antti, Vapalahti, Olli, Sironen, Tarja

“…Hantaviruses have co-existed with their hosts for millions of years. Seewis virus (SWSV), a soricomorph-borne hantavirus, is widespread in Eurasia, ranging…”
Get full text

Genome Evolution of a Symbiont Population for Pathogen Defense in Honeybees by Dyrhage, Karl, Garcia-Montaner, Andrea, Tamarit, Daniel, Seeger, Christian, Näslund, Kristina, Olofsson, Tobias C, Vasquez, Alejandra, Webster, Matthew T, Andersson, Siv G E

“…Abstract The honeybee gut microbiome is thought to be important for bee health, but the role of the individual members is poorly understood. Here, we present…”
Get full text

Switches in Genomic GC Content Drive Shifts of Optimal Codons under Sustained Selection on Synonymous Sites by Sun, Yu, Tamarit, Daniel, Andersson, Siv G E

“…The major codon preference model suggests that codons read by tRNAs in high concentrations are preferentially utilized in highly expressed genes. However, the…”
Get full text