Search Results - "Tai, Yu Chuan"

Functional Genomic Analysis of Oligodendrocyte Differentiation by Dugas, Jason C, Tai, Yu Chuan, Speed, Terence P, Ngai, John, Barres, Ben A

“…To better understand the molecular mechanisms governing oligodendrocyte (OL) differentiation, we have used gene profiling to quantitatively analyze gene…”
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On Gene Ranking Using Replicated Microarray Time Course Data by Chuan Tai, Yu, Speed, Terence P

“…Consider the ranking of genes using data from replicated microarray time course experiments, where there are multiple biological conditions, and the genes of…”
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A multivariate empirical Bayes statistic for replicated microarray time course data by Tai, Yu Chuan, Speed, Terence P.

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Breast Cancer Risk Among Male BRCA1 and BRCA2 Mutation Carriers by Tai, Yu Chuan, Domchek, Susan, Parmigiani, Giovanni, Chen, Sining

“…Men who carry germline mutations in the BRCA2 gene have a higher risk of developing breast carcinoma than men in the general population. Men who carry germline…”
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Temporal Global Expression Data Reveal Known and Novel Salicylate-Impacted Processes and Regulators Mediating Powdery Mildew Growth and Reproduction on Arabidopsis by Chandran, Divya, Tai, Yu Chuan, Hather, Gregory, Dewdney, Julia, Denoux, Carine, Burgess, Diane G., Ausubel, Frederick M., Speed, Terence P., Wildermuth, Mary C.

“…Salicylic acid (SA) is a critical mediator of plant innate immunity. It plays an important role in limiting the growth and reproduction of the virulent powdery…”
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Mutational profile and prognostic significance of TP53 in diffuse large B-cell lymphoma patients treated with R-CHOP: report from an International DLBCL Rituximab-CHOP Consortium Program Study by Xu-Monette, Zijun Y., Wu, Lin, Visco, Carlo, Tai, Yu Chuan, Tzankov, Alexander, Liu, Wei-min, Montes-Moreno, Santiago, Dybkær, Karen, Chiu, April, Orazi, Attilio, Zu, Youli, Bhagat, Govind, Richards, Kristy L., Hsi, Eric D., Zhao, X. Frank, Choi, William W.L., Zhao, Xiaoying, van Krieken, J. Han, Huang, Qin, Huh, Jooryung, Ai, Weiyun, Ponzoni, Maurilio, Ferreri, Andrés J.M., Zhou, Fan, Kahl, Brad S., Winter, Jane N., Xu, Wei, Li, Jianyong, Go, Ronald S., Li, Yong, Piris, Miguel A., Møller, Michael B., Miranda, Roberto N., Abruzzo, Lynne V., Medeiros, L. Jeffrey, Young, Ken H.

“…TP53 mutation is an independent marker of poor prognosis in patients with diffuse large B-cell lymphoma (DLBCL) treated with cyclophosphamide,…”
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A Multivariate Empirical Bayes Statistic for Replicated Microarray Time Course Data by Tai, Yu Chuan, Speed, Terence P.

“…In this paper we derive one- and two-sample multivariate empirical Bayes statistics (the MB-statistics) to rank genes in order of interest from longitudinal…”
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Incorporating tumor immunohistochemical markers in BRCA1 and BRCA2 carrier prediction by Tai, Yu Chuan, Chen, Sining, Parmigiani, Giovanni, Klein, Alison P

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Analysis of gene expression during neurite outgrowth and regeneration by Szpara, Moriah L, Vranizan, Karen, Tai, Yu Chuan, Goodman, Corey S, Speed, Terence P, Ngai, John

“…The ability of a neuron to regenerate functional connections after injury is influenced by both its intrinsic state and also by extrinsic cues in its…”
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Extracting Grammatical Error Corrections from Wikipedia Revision History by Chen, Jhih-Jie, Wu, Yi-Dong, Tai, Yu-Chuan, Yang, Ching-Yu, Tu, Hai-Lun, Chang, Jason S.

“…This paper describes the process of extracting and filtering Wikipedia revision history as a resource for grammatical error correction (GEC). Edits in…”
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Molecular Subtyping of Diffuse Large B-Cell Lymphoma Using a Novel Quantitative RT-PCR Assay by Ta, Robert, Santini, Chris, Gou, Patricia, Lee, Greg, Tai, Yu Chuan, O’Brien, Cathal, Fontecha, Marcel, Grant, Cliona, Bacon, Larry, Finn, Stephen, Vandenberghe, Elisabeth, Quinn, Fiona, Dua, Rajiv, Flavin, Richard

“…Diffuse large B-cell lymphoma (DLBCL) is a heterogeneous disease. Cell-of-origin classification in DLBCL has identified activated B cell (ABC) and germinal…”
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Patients with diffuse large B-cell lymphoma of germinal center origin with BCL2 translocations have poor outcome, irrespective of MYC status: a report from an International DLBCL rituximab-CHOP Consortium Program Study by Visco, Carlo, Tzankov, Alexander, Xu-Monette, Zijun Y, Miranda, Roberto N, Tai, Yu Chuan, Li, Yan, Liu, Wei-min, d'Amore, Emanuele S G, Li, Yong, Montes-Moreno, Santiago, Dybkær, Karen, Chiu, April, Orazi, Attilio, Zu, Youli, Bhagat, Govind, Wang, Huan-You, Dunphy, Cherie H, His, Eric D, Zhao, X Frank, Choi, William W L, Zhao, Xiaoying, van Krieken, J Han, Huang, Qin, Ai, Weiyun, O'Neill, Stacey, Ponzoni, Maurilio, Ferreri, Andres J M, Kahl, Brad S, Winter, Jane N, Go, Ronald S, Dirnhofer, Stephan, Piris, Miguel A, Møller, Michael B, Wu, Lin, Medeiros, L Jeffrey, Young, Ken H

“…Diffuse large B-cell lymphoma can be classified by gene expression profiling into germinal center and activated B-cell subtypes with different prognoses after…”
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Abstract 6162: High resolution detection of HER2 copy number variation in admixed breast cancer cell lines and HER2+ FFPE donor tissue using a digital PCR multigene reference panel by Landrith, Tyler, Smith, Samantha, Chan, Jennifer, Christensen, Mari, Tai, Yu Chuan, Gonzales, Megan, Yee, William, Newton, Nicolas, Pattje, Wouter, Bogard, Patrick, Yang, Wei

“…Abstract The measurement of HER2 (ERBB2) gene amplification guides both the prognosis and treatment of breast cancer, as amplification correlates with worse…”
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Abstract 1394: RT-PCR and NGS comparison: detection of known EGFR mutations in non-small-cell lung cancer clinical samples with routine laboratory testing by Palma, John F., Tai, Yu Chuan, Liu, Wei-min, Anderson, Steve, Madan, Anup, Longshore, John W., Rao, Arundhati

“…Abstract Next-generation sequencing (NGS) promises to deliver clinical mutation analysis for multiple actionable biomarkers at once. However, most targeted…”
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Abstract 5156: Multiplexed EGFR mutation detection with C797S and T790M allelic context using six-color digital PCR by Yang, Wei, Christensen, Mari, Chan, Jennifer K., Tsai, Julie, Patten, Nancy, Tran, Ha B., Hillman, Grant R., Tai, Yu Chuan, Bogard, Patrick, Litterst, Claudia M., Brophy, Victoria H., Newton, Nick, Nelson, Christopher D., Pattje, Wouter J.

“…Abstract Non-small cell lung cancer (NSCLC) patients harboring activating mutations in epidermal growth factor receptor (EGFR) are benefited from Tyrosine…”
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Copy number alterations in prostate tumors and disease aggressiveness by Cheng, Iona, Levin, Albert M., Tai, Yu Chuan, Plummer, Sarah, Chen, Gary K., Neslund-Dudas, Christine, Casey, Graham, Rybicki, Benjamin A., Witte, John S.

“…Detecting genomic alterations that result in more aggressive prostate cancer may improve clinical treatment and our understanding of the biology underlying…”
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Abstract C24: Detection of BRAFV600E in cell free DNA from patients with papillary thyroid cancer by Sherman, Eric, Cohen, Ezra E.W., Cabanillas, Maria E., Gianoukakis, Andrew, Tai, Yu Chuan, Langland, Rachel A., Brose, Marcia S.

“…Abstract Detection of mutant DNA from blood has shown increasing usefulness in diagnosis and prognosis for cancer patients. Most studies have focused on lung…”
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Spotted long oligonucleotide arrays for human gene expression analysis by Barczak, Andrea, Rodriguez, Madeleine Willkom, Hanspers, Kristina, Koth, Laura L, Tai, Yu Chuan, Bolstad, Benjamin M, Speed, Terence P, Erle, David J

“…DNA microarrays produced by deposition (or 'spotting')of a single long oligonucleotide probe for each gene may be an attractive alternative to other types of…”
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Ultra-high throughput single-cell analysis of proteins and RNAs by split-pool synthesis by O’Huallachain, Maeve, Bava, Felice-Alessio, Shen, Mary, Dallett, Carolina, Paladugu, Sri, Samusik, Nikolay, Yu, Simon, Hussein, Razika, Hillman, Grantland R., Higgins, Samuel, Lou, Melanie, Trejo, Angelica, Qin, Laura, Tai, Yu Chuan, Kinoshita, Shigemi M., Jager, Astraea, Lashkari, Deval, Goltsev, Yury, Ozturk, Sedide, Nolan, Garry P.

“…Single-cell omics provide insight into cellular heterogeneity and function. Recent technological advances have accelerated single-cell analyses, but workflows…”
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Segmentation and Estimation for SNP Microarrays: A Bayesian Multiple Change-Point Approach by Tai, Yu Chuan, Kvale, Mark N., Witte, John S.

“…High-density single-nucleotide polymorphism (SNP) microarrays provide a useful tool for the detection of copy number variants (CNVs). The analysis of such…”
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