Search Results - "Tabei, S M Ali"

Entropy production rate is maximized in non-contractile actomyosin by Seara, Daniel S., Yadav, Vikrant, Linsmeier, Ian, Tabatabai, A. Pasha, Oakes, Patrick W., Tabei, S. M. Ali, Banerjee, Shiladitya, Murrell, Michael P.

“…The actin cytoskeleton is an active semi-flexible polymer network whose non-equilibrium properties coordinate both stable and contractile behaviors to maintain…”
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Distribution of directional change as a signature of complex dynamics by Burov, Stanislav, Tabei, S. M. Ali, Huynh, Toan, Murrell, Michael P., Philipson, Louis H., Rice, Stuart A., Gardel, Margaret L., Scherer, Norbert F., Dinner, Aaron R.

“…Analyses of random walks traditionally use the mean square displacement (MSD) as an order parameter characterizing dynamics. We show that the distribution of…”
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Stability and Stoichiometry of Bilayer Phospholipid–Cholesterol Complexes: Relationship to Cellular Sterol Distribution and Homeostasis by Lange, Yvonne, Tabei, S. M. Ali, Ye, Jin, Steck, Theodore L

“…Is cholesterol distributed among intracellular compartments by passive equilibration down its chemical gradient? If so, its distribution should reflect the…”
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Distinguishing synaptic vesicle precursor navigation of microtubule ends with a single rate constant model by Gramlich, M. W., Balseiro-Gómez, S., Tabei, S. M. Ali, Parkes, M., Yogev, S.

“…Axonal motor driven cargo utilizes the microtubule cytoskeleton in order to direct cargo, such as synaptic vesicle precursors (SVP), to where they are needed…”
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Improved statistical methods enable greater sensitivity in rhythm detection for genome-wide data by Hutchison, Alan L, Maienschein-Cline, Mark, Chiang, Andrew H, Tabei, S M Ali, Gudjonson, Herman, Bahroos, Neil, Allada, Ravi, Dinner, Aaron R

“…Robust methods for identifying patterns of expression in genome-wide data are important for generating hypotheses regarding gene function. To this end, several…”
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Dynamic motions of molecular motors in the actin cytoskeleton by Jung, Wonyeong, Tabatabai, A. Pasha, Thomas, Jacob J., Tabei, S. M. Ali, Murrell, Michael P., Kim, Taeyoon

“…During intracellular transport, cellular cargos, such as organelles, vesicles, and proteins, are transported within cells. Intracellular transport plays an…”
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Cycling State that Can Lead to Glassy Dynamics in Intracellular Transport by Scholz, Monika, Burov, Stanislav, Weirich, Kimberly L., Scholz, Björn J., Tabei, S. M. Ali, Gardel, Margaret L., Dinner, Aaron R.

“…Power-law dwell times have been observed for molecular motors in living cells, but the origins of these trapped states are not known. We introduce a minimal…”
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Intracellular transport of insulin granules is a subordinated random walk by Tabei, S. M. Ali, Burov, Stanislav, Kim, Hee Y., Kuznetsov, Andrey, Huynh, Toan, Jureller, Justin, Philipson, Louis H., Dinner, Aaron R., Scherer, Norbert F.

“…We quantitatively analyzed particle tracking data on insulin granules expressing fluorescent fusion proteins in MIN6 cells to better understand the motions…”
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Dynamics and selective remodeling of the DNA-binding domains of RPA by Pokhrel, Nilisha, Caldwell, Colleen C., Corless, Elliot I., Tillison, Emma A., Tibbs, Joseph, Jocic, Nina, Tabei, S. M. Ali, Wold, Marc S., Spies, Maria, Antony, Edwin

“…Replication protein A (RPA) coordinates important DNA metabolic events by stabilizing single-stranded DNA (ssDNA) intermediates, activating the DNA-damage…”
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A basic model for the association of ligands with membrane cholesterol: application to cytolysin binding by Lange, Yvonne, Tabei, S.M. Ali, Steck, Theodore L.

“…Almost all the cholesterol in cellular membranes is associated with phospholipids in simple stoichiometric complexes. This limits the binding of sterol ligands…”
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A basic model for cell cholesterol homeostasis by Steck, Theodore L., Tabei, S. M. Ali, Lange, Yvonne

“…Cells manage their cholesterol by negative feedback using a battery of sterol‐responsive proteins. How these activities are coordinated so as to specify the…”
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KERA: analysis tool for multi-process, multi-state single-molecule data by Tibbs, Joseph, Ghoneim, Mohamed, Caldwell, Colleen C, Buzynski, Troy, Bowie, Wayne, Boehm, Elizabeth M, Washington, M Todd, Tabei, S M Ali, Spies, Maria

“…Abstract Molecular machines within cells dynamically assemble, disassemble and reorganize. Molecular interactions between their components can be observed at…”
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Model for competition from self during passive immunization, with application to broadly neutralizing antibodies for HIV by Ali Tabei, S.M, Li, Ying, Weigert, Martin, Dinner, Aaron R

“…Highlights ► We propose a mathematical model to interpret observations concerning the behavior of broadly neutralizing antibodies for chronic HIV in vivo . ►…”
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Microtubule orientation and spacing within bundles is critical for long-range kinesin-1 motility by Conway, Leslie, Gramlich, Michael W., Ali Tabei, S. M., Ross, Jennifer L.

“…Cells rely on active transport to quickly organize cellular cargo. How cells regulate transport is not fully understood. One proposed mechanism is that motor…”
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Estimating the Cholesterol Affinity of Integral Membrane Proteins from Experimental Data by Steck, Theodore L., Ali Tabei, S. M., Lange, Yvonne

“…The cholesterol affinities of many integral plasma membrane proteins have been estimated by molecular computation. However, these values lack experimental…”
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Effects of Intercalating Molecules on the Polymer Properties of DNA by Tibbs, Joseph, Tabei, S. M. Ali, Kidd, Timothy E, Peters, Justin P

“…Atomic force microscopy (AFM) enables determination of physical properties from single DNA molecules. Insertion of aromatic molecules into the structure of DNA…”
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Human hnRNPA1 reorganizes telomere-bound replication protein A by Granger, Sophie L, Sharma, Richa, Kaushik, Vikas, Razzaghi, Mortezaali, Honda, Masayoshi, Gaur, Paras, Bhat, Divya S, Labenz, Sabryn M, Heinen, Jenna E, Williams, Blaine A, Tabei, S M Ali, Wlodarski, Marcin W, Antony, Edwin, Spies, Maria

“…Human replication protein A (RPA) is a heterotrimeric ssDNA binding protein responsible for many aspects of cellular DNA metabolism. Dynamic interactions of…”
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Anomalous intracellular transport phases depend on cytoskeletal network features by Maelfeyt, Bryan, Tabei, S M Ali, Gopinathan, Ajay

“…Intracellular transport in eukaryotic cells consists of phases of passive, diffusion-based transport and active, motor-driven transport along filaments that…”
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Modeling bistable cell-fate choices in the Drosophila eye: qualitative and quantitative perspectives by Graham, Thomas G W, Tabei, S M Ali, Dinner, Aaron R, Rebay, Ilaria

“…A major goal of developmental biology is to understand the molecular mechanisms whereby genetic signaling networks establish and maintain distinct cell types…”
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Entrainment of a driven oscillator as a dynamical phase transition by Dickson, Alex, Tabei, S M Ali, Dinner, Aaron R

“…Large deviation theory has emerged as the natural language with which to study transitions between dynamical phases, such as the glass transition. Here we use…”
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