Search Results - "Swarbreck, D."

Arabidopsis Information Resource (TAIR): gene structure and function annotation by Swarbreck, David, Wilks, Christopher, Lamesch, Philippe, Berardini, Tanya Z, Garcia-Hernandez, Margarita, Foerster, Hartmut, Li, Donghui, Meyer, Tom, Muller, Robert, Ploetz, Larry, Radenbaugh, Amie, Singh, Shanker, Swing, Vanessa, Tissier, Christophe, Zhang, Peifen, Huala, Eva

“…The Arabidopsis Information Resource (TAIR, http://arabidopsis.org) is the model organism database for the fully sequenced and intensively studied model plant…”
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Chromosome-level genome sequence of the Genetically Improved Farmed Tilapia (GIFT, Oreochromis niloticus) highlights regions of introgression with O. mossambicus by Etherington, G J, Nash, W, Ciezarek, A, Mehta, T K, Barria, A, Peñaloza, C, Khan, M G Q, Durrant, A, Forrester, N, Fraser, F, Irish, N, Kaithakottil, G G, Lipscombe, J, Trong, T, Watkins, C, Swarbreck, D, Angiolini, E, Cnaani, A, Gharbi, K, Houston, R D, Benzie, J A H, Haerty, W

“…The Nile tilapia (Oreochromis niloticus) is the third most important freshwater fish for aquaculture. Its success is directly linked to continuous breeding…”
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The DNA sequence and biological annotation of human chromosome 1 by Martin, S, Pelan, S, Chapman, J. C, Cobley, V, Grocock, R, Kaul, R, Hunt, S. E, Sims, S, Mistry, S, Bye, J, Frankish, A, Peck, A. I, Pearce, A. V, White, S, Hall, R. E, Burton, J, Frankland, J, Ambrose, K. D, Hunter, G, Van Helmond, Z, Errington, H, Mashreghi-Mohammadi, M, McLaren, S, Deadman, R, Kimberley, A. M, Holmes, S, Jones, M. C, French, L, Garnett, J, Phillimore, B. J, Ross, M. T, Sehra, H. K, Hubbard, T, Brown, A. J, Ainscough, R, Parker, A, McLay, K. E, O'Dell, C. N, Williams, H, Durbin, R, Isherwood, J, Plumb, R, Andrews, T. D, Dunn, M, Earthrowl, M, Glithero, R. J, Ghori, M. R. J, Subramanian, S, Babbage, A. K, Atkinson, A, Harrow, J, Gilby, L. M, Skuce, C. D, Lawlor, S, Howden, P. J, Bray-Allen, S, Zhou, Y, Rouse, G, Matthews, L, Lovell, J, Gillett, W, Bailey, J, Sycamore, N, Wallis, J. M, Griffiths-Jones, S, James, R, Almeida, J. P, Kershaw, J. K, Loveland, J, Carter, N. P, Swarbreck, D, Wooster, R, Rogers, J, McVean, G, Joy, A, Kibukawa, M, M oore, M. J. F, Grafham, D. V, Beck, S, Ashwell, R. I. S, Lush, M. J, Shownkeen, R, Corby, N, Harrison, E. S. I, King, A, Bird, C. P, Lyne, R, Anderson, F, Phillips, K, Scott, C. E, Woodfine, K, Bethel, G, Coville, G. J, Aubin, K, Howe, K. L, Buckley, D, Ellington, A. G, Barlow, K. F, Raymond, C, Lloyd, C

“…The reference sequence for each human chromosome provides the framework for understanding genome function, variation and evolution. Here we report the finished…”
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The DNA sequence and comparative analysis of human chromosome 10 by Deloukas, P, Grafham, D. V, French, L, Steward, C. A, Jones, M. C, Scott, C, Hunt, S. E, Gilbert, J. G. R, Ashurst, J. L, Taylor, A, Battles, J, Bird, C. P, Ainscough, R, Almeida, J. P, Ashwell, R. I. S, Babbage, A. K, Bagguley, C. L, Bailey, J, Banerjee, R, Bates, K, Beasley, H, Burford, D. C, Burrill, W, Burton, J, Cahill, P, Carter, N. P, Chapman, J. C, Clark, S. Y, Corby, N, Coulson, A, Dhami, P, Dunn, M, Faulkner, L, Frankish, A, Frankland, J. A, Garnett, J, Griffiths, C, Gustafson, E, Hammond, S, Harley, J. L, Hart, E, Ho, T. P, Hopkins, B, Howden, P. J, Hynds, C, Johnson, C, Kana, A, Kershaw, J. K, Kokkinaki, M, Laird, G. K, Lawlor, S, Lee, H. M, Lloyd, C, Lloyd, D. M, Loveland, J, Lovell, J, McLay, K. E, Matthews, L, Nickerson, T, Nguyen, M, Overton-Larty, E, Palmer, S. A, Pearce, A. V, Peck, A. I, Pelan, S, Phillimore, B, Porter, K, Rice, C. M, Rogosin, A, Ross, M. T, Sarafidou, T, Sehra, H. K, Shownkeen, R, Skuce, C. D, Smith, M, Standring, L, Sycamore, N, Thorpe, A, Torcasso, W, Tracey, A, Tromans, A, Tsolas, J, Wall, M, Walsh, J, Wang, H, Weinstock, K, West, A. P, Whitehead, S. L, Wilming, L, Wray, P. W, Young, L, Chen, Y, Lovering, R. C, Siebert, R, Fechtel, K, Bentley, D, Hubbard, T, Doucette-Stamm, L, Beck, S, Rogers, J

“…The finished sequence of human chromosome 10 comprises a total of 131,666,441 base pairs. It represents 99.4% of the euchromatic DNA and includes one megabase…”
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Pathology of the liver, kidney and gonad of flounder ( Platichthys flesus) from a UK estuary impacted by endocrine disrupting chemicals by Simpson, M.G, Parry, M, Kleinkauf, A, Swarbreck, D, Walker, P, Leah, R.T

“…The Mersey estuary is highly contaminated with xenobiotics compared to the nearby Dee estuary. Male flounder, a migratory flatfish caught in the Mersey…”
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The DNA sequence and biological annotation of human chromosome 1 by Gregory, S. G, Swarbreck, D, Howe, K. L, Woodfine, K, Spencer, C. C. A, Searle, S, Zhou, Y, Kokocinski, F, McDonald, L, Evans, R, Phillips, K, Atkinson, A, Jones, C, Andrews, T. D, Lloyd, C, Ainscough, R, Almeida, J. P, Ambrose, K. D, Anderson, F, Andrew, R. W, Ashwell, R. I. S, Aubin, K, Bagguley, C. L, Bailey, J, Banerjee, R, Beasley, H, Bethel, G, Bray-Allen, S, Brown, A. J, Bryant, S. P, Buckley, D, Burford, D. C, Burrill, W. D. H, Bye, J, Carder, C, Chapman, J. C, Clark, S. Y, Collier, R. E, Corby, N, Coville, G. J, Dhami, P, Dovey, O, Ellington, A. G, Frankish, A, Gay, L, Ghori, M. R. J, Gilby, L. M, Gillett, W, Grocock, R, Hammond, S, Harrison, E. S. I, Holmes, S, Holt, K, Howden, P. J, Hunt, A. R, Hunt, S. E, Hunter, G, James, R, Johnson, C, Johnson, D, Kershaw, J. K, Kibukawa, M, Laird, G, Lawlor, S, Lovell, J, Lush, M. J, Mashreghi-Mohammadi, M, Milne, S, Mistry, S, oore, M. J. F. M, Nickerson, T, Palmeiri, A, Parker, A, Pearce, A. V, Pelan, S, Phelps, K, Phillimore, B. J, Porter, K. M, Rajan, J, Raymond, C, Rouse, G, Saenphimmachak, C, Shownkeen, R, Sims, S, Skuce, C. D, Smith, M, Sycamore, N, Tracey, A, Van Helmond, Z, White, S, Wilming, L, Wray, P. W, Wu, Z, Sulston, J. E, Hubbard, T, Carter, N. P, McVean, G, Harrow, J, Beck, S, Bentley, D. R

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The mucin-degradation strategy of Ruminococcus gnavus: The importance of intramolecular trans-sialidases by Crost, Emmanuelle H., Tailford, Louise E., Monestier, Marie, Swarbreck, David, Henrissat, Bernard, Crossman, Lisa C., Juge, Nathalie

“…We previously identified and characterized an intramolecular trans-sialidase (IT-sialidase) in the gut symbiont Ruminococcus gnavus ATCC 29149, which is…”
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GFam: a platform for automatic annotation of gene families by Sasidharan, Rajkumar, Nepusz, Tamás, Swarbreck, David, Huala, Eva, Paccanaro, Alberto

“…We have developed GFam, a platform for automatic annotation of gene/protein families. GFam provides a framework for genome initiatives and model organism…”
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DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage by Zody, Michael C, Nusbaum, Chad, Garber, Manuel, Adams, David J, Sharpe, Ted, Harrow, Jennifer, Lupski, James R, Nicholson, Christine, Searle, Steven M, Wilming, Laurens, Young, Sarah K, Abouelleil, Amr, Allen, Nicole R, Bi, Weimin, Bloom, Toby, Borowsky, Mark L, Bugalter, Boris E, Butler, Jonathan, Chang, Jean L, Chen, Chao-Kung, Cook, April, Corum, Benjamin, Cuomo, Christina A, de Jong, Pieter J, DeCaprio, David, Dewar, Ken, FitzGerald, Michael, Gilbert, James, Gibson, Richard, Gnerre, Sante, Goldstein, Steven, Grafham, Darren V, Grocock, Russell, Hafez, Nabil, Hagopian, Daniel S, Hart, Elizabeth, Norman, Catherine Hosage, Humphray, Sean, Jaffe, David B, Jones, Matt, Kamal, Michael, Khodiyar, Varsha K, LaButti, Kurt, Laird, Gavin, Lehoczky, Jessica, Liu, Xiaohong, Lokyitsang, Tashi, Loveland, Jane, Lui, Annie, Macdonald, Pendexter, Major, John E, Matthews, Lucy, Mauceli, Evan, McCarroll, Steven A, Mihalev, Atanas H, Mudge, Jonathan, Nguyen, Cindy, Nicol, Robert, O'Leary, Sinéad B, Osoegawa, Kazutoyo, Schwartz, David C, Shaw-Smith, Charles, Stankiewicz, Pawel, Steward, Charles, Swarbreck, David, Venkataraman, Vijay, Whittaker, Charles A, Yang, Xiaoping, Zimmer, Andrew R, Bradley, Allan, Hubbard, Tim, Birren, Bruce W, Rogers, Jane, Lander, Eric S

“…Chromosome 17 is unusual among the human chromosomes in many respects. It is the largest human autosome with orthology to only a single mouse chromosome,…”
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DNA sequence and analysis of human chromosome 9 by Oliver, K, Hunt, A. R, Loveland, J. E, Howe, K. L, Searle, S, Hunt, S. E, Scott, C. E, Ainscough, R, Almeida, J. P, Ambrose, K. D, Ashwell, R. I. S, Babbage, A. K, Babbage, S, Bagguley, C. L, Barker, D. J, Barlow, K. F, Bates, K, Beasley, H, Bird, C. P, Bray-Allen, S, Burford, D, Burrill, W, Burton, J, Carder, C, Carter, N. P, Chapman, J. C, Clarke, G, Clark, S. Y, Clee, C. M, Corby, N, Crosier, M, Davies, J, Dhami, P, Dutta, I, Dyer, L. W, Earthrowl, M. E, Faulkner, L, Fleming, C. J, Frankish, A, Frankland, J. A, French, L, Garnett, J, Glison, C, Gribble, S, Griffiths, C, Grocock, R, Guy, J, Hall, R. E, Hammond, S, Harley, J. L, Hart, E. A, Heath, P. D, Henderson, C. D, Hopkins, B. L, Howard, P. J, Huckle, E, Kay, M, Kershaw, J. K, King, A, Knights, A, Langford, C, Leongamornlert, D. A, Leversha, M, Lloyd, D. M, Lovell, J, Martin, S, Mashreghi-Mohammadi, M, Matthews, L, McLaren, S, McLay, K. E, Nisbett, J, Nordsiek, G, Peck, A. I, Porter, K. M, Pandian, R, Pelan, S, Phillimore, B, Sehra, H. K, Skuce, C. D, Smith, M, Steward, C. A, Swarbreck, D, Sycamore, N, Thorpe, A, Tracey, A, Wall, M, Wallis, J. M, West, A. P, Whitehead, S. L, Williams, S. A, Wilming, L, Wray, P. W, Ashurst, J. L, Durbin, R, Sulston, J. E, Jackson, M. J, Bentley, D. R, Beck, S, Rogers, J, Dunham, I

“…Chromosome 9 is highly structurally polymorphic. It contains the largest autosomal block of heterochromatin, which is heteromorphic in 6-8% of humans, whereas…”
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Genomic Anatomy of the Tyrp1 (Brown) Deletion Complex by Smyth, Ian M., Wilming, Laurens, Lee, Angela W., Taylor, Martin S., Gautier, Phillipe, Barlow, Karen, Wallis, Justine, Martin, Sancha, Glithero, Rebecca, Phillimore, Ben, Pelan, Sarah, Andrew, Rob, Holt, Karen, Taylor, Ruth, McLaren, Stuart, Burton, John, Bailey, Jonathon, Sims, Sarah, Squares, Jan, Plumb, Bob, Joy, Ann, Gibson, Richard, Gilbert, James, Hart, Elizabeth, Laird, Gavin, Loveland, Jane, Mudge, Jonathan, Steward, Charlie, Swarbreck, David, Harrow, Jennifer, North, Philip, Leaves, Nicholas, Greystrong, John, Coppola, Maria, Manjunath, Shilpa, Campbell, Mark, Smith, Mark, Strachan, Gregory, Tofts, Calli, Boal, Esther, Cobley, Victoria, Hunter, Giselle, Kimberley, Christopher, Thomas, Daniel, Cave-Berry, Lee, Weston, Paul, Botcherby, Marc R. M., White, Sharon, Edgar, Ruth, Cross, Sally H., Irvani, Marjan, Hummerich, Holger, Simpson, Eleanor H., Johnson, Dabney, Hunsicker, Patricia R., Little, Peter F. R., Hubbard, Tim, Campbell, R. Duncan, Rogers, Jane, Jackson, Ian J.

“…Chromosome deletions in the mouse have proven invaluable in the dissection of gene function. The brown deletion complex comprises >28 independent genome…”
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General condition biomarkers in relation to contaminant burden in European flounder ( Platichthys flesus) by Kleinkauf, Anne, Connor, Leslie, Swarbreck, David, Levene, Carolyn, Walker, Peter, Johnson, Paul J, Leah, Richard T

“…In respect to the differences found for vitellogenin (VTG) expression in male and immature flounder, general biological aspects and a set of chemical residues…”
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Isolation and characterisation of two multidrug resistance associated protein genes from maize by Swarbreck, David, Ripoll, Pierre-Jean, Brown, Donna A, Edwards, Keith J, Theodoulou, Frederica

“…Two genes encoding ATP-binding cassette (ABC) transporters were isolated from the crop plant Zea mays (maize). The clones, designated ZmMRP1 and ZmMRP2, were…”
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Corrigendum: The DNA sequence and biological annotation of human chromosome 1 by Gregory, S G, Barlow, K F, McLay, K E, Kaul, R, Swarbreck, D, Dunham, A, Scott, C E, Howe, K L, Woodfine, K, Spencer, C C A, Jones, M C, Gillson, C, Searle, S, Zhou, Y, Kokocinski, F, McDonald, L, Evans, R, Phillips, K, Atkinson, A, Cooper, R

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Erratum: The DNA sequence and biological annotation of human chromosome 1 by Gregory, S. G., Barlow, K. F., McLay, K. E., Kaul, R., Swarbreck, D., Dunham, A., Scott, C. E., Howe, K. L., Woodfine, K., Spencer, C. C. A., Jones, M. C., Gillson, C., Searle, S., Zhou, Y., Kokocinski, F., McDonald, L., Evans, R., Phillips, K., Atkinson, A., Cooper, R., Jones, C., Hall, R. E., Andrews, T. D., Lloyd, C., Ainscough, R., Almeida, J. P., Ambrose, K. D., Anderson, F., Andrew, R. W., Ashwell, R. I. S., Aubin, K., Babbage, A. K., Bagguley, C. L., Bailey, J., Banerjee, R., Beasley, H., Bethel, G., Bird, C. P., Bray-Allen, S., Brown, J. Y., Brown, A. J., Bryant, S. P., Buckley, D., Burford, D. C., Burrill, W. D. H., Burton, J., Bye, J., Carder, C., Chapman, J. C., Clark, S. Y., Clarke, G., Clee, C., Clegg, S. M., Cobley, V., Collier, R. E., Corby, N., Coville, G. J., Davies, J., Deadman, R., Dhami, P., Dovey, O., Dunn, M., Earthrowl, M., Ellington, A. G., Errington, H., Faulkner, L. M., Frankish, A., Frankland, J., French, L., Garner, P., Garnett, J., Gay, L., Ghori, M. R. J., Gibson, R., Gilby, L. M., Gillett, W., Glithero, R. J., Grafham, D. V., Gribble, S. M., Griffiths, C., Griffiths-Jones, S., Grocock, R., Hammond, S., Harrison, E. S. I., Hart, E., Haugen, E., Heath, P. D., Holmes, S., Holt, K., Howden, P. J., Hunt, A. R., Hunt, S. E., Hunter, G., Isherwood, J., James, R., Johnson, C., Johnson, D., Joy, A., Kay, M., Kershaw, J. K.

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