Search Results - "Swaminathan, Jagannath"

A theoretical justification for single molecule peptide sequencing by Swaminathan, Jagannath, Boulgakov, Alexander A, Marcotte, Edward M

“…The proteomes of cells, tissues, and organisms reflect active cellular processes and change continuously in response to intracellular and extracellular cues…”
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Influence of competing metabolic processes on the molecular weight of hyaluronic acid synthesized by Streptococcus zooepidemicus by Jagannath, Swaminathan, Ramachandran, K.B.

“…Hyaluronic acid (HA) is a linear high molecular weight glycosaminoglycan polymer with its molecular weight determining its physiological role, rheological…”
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Transiently transfected purine biosynthetic enzymes form stress bodies by Zhao, Alice, Tsechansky, Mark, Swaminathan, Jagannath, Cook, Lindsey, Ellington, Andrew D, Marcotte, Edward M

“…It has been hypothesized that components of enzymatic pathways might organize into intracellular assemblies to improve their catalytic efficiency or lead to…”
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Tertiary Amine Coupling by Oxidation for Selective Labeling of Dimethyl Lysine Post-Translational Modifications by Emenike, Benjamin, Czabala, Patrick, Farhi, Jonathan, Swaminathan, Jagannath, Anslyn, Eric V., Spangle, Jennifer, Raj, Monika

“…Lysine dimethylation (Kme2) is a crucial post-translational modification (PTM) that regulates biological processes and is implicated in diseases. There is…”
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Highly parallel single-molecule identification of proteins in zeptomole-scale mixtures by Swaminathan, Jagannath, Boulgakov, Alexander A, Hernandez, Erik T, Bardo, Angela M, Bachman, James L, Marotta, Joseph, Johnson, Amber M, Anslyn, Eric V, Marcotte, Edward M

“…Single-protein molecules are identified in parallel through fluorescence monitoring of Edman degradation. The identification and quantification of proteins…”
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Studies of Surface Preparation for the Fluorosequencing of Peptides by Hinson, Caroline M, Bardo, Angela M, Shannon, Cassie E, Rivera, Sebastian, Swaminathan, Jagannath, Marcotte, Edward M, Anslyn, Eric V

“…Silica passivating agents have shown great success in minimizing nonspecific protein binding to glass surfaces for imaging and microscopy applications…”
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Photoredox-Catalyzed Decarboxylative C‑Terminal Differentiation for Bulk- and Single-Molecule Proteomics by Zhang, Le, Floyd, Brendan M, Chilamari, Maheshwerreddy, Mapes, James, Swaminathan, Jagannath, Bloom, Steven, Marcotte, Edward M, Anslyn, Eric V

“…Methods for the selective labeling of biogenic functional groups on peptides are being developed and used in the workflow of both current and emerging…”
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Peptide Fragment Ion Analyser (PFIA): a simple and versatile tool for the interpretation of tandem mass spectrometric data and de novo sequencing of peptides by Jagannath, Swaminathan, Sabareesh, Varatharajan

“…The software Peptide Fragment Ion Analyser (PFIA) aids in the analysis and interpretation of tandem mass spectrometric data of peptides. The software package…”
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Evaluating the Effect of Dye–Dye Interactions of Xanthene-Based Fluorophores in the Fluorosequencing of Peptides by Bachman, James L., Wight, Christopher D., Bardo, Angela M., Johnson, Amber M., Pavlich, Cyprian I., Boley, Alexander J., Wagner, Holden R., Swaminathan, Jagannath, Iverson, Brent L., Marcotte, Edward M., Anslyn, Eric V.

“…A peptide sequencing scheme utilizing fluorescence microscopy and Edman degradation to determine the amino acid position in fluorophore-labeled peptides was…”
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Solid-Phase Peptide Capture and Release for Bulk and Single-Molecule Proteomics by Howard, Cecil J, Floyd, Brendan M, Bardo, Angela M, Swaminathan, Jagannath, Marcotte, Edward M, Anslyn, Eric V

“…The field of proteomics has expanded recently with more sensitive techniques for the bulk measurement of peptides as well as single-molecule techniques. One…”
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A Theoretical Justification for Single Molecule Peptide Sequencing: e1004080 by Swaminathan, Jagannath, Boulgakov, Alexander A, Marcotte, Edward M

“…The proteomes of cells, tissues, and organisms reflect active cellular processes and change continuously in response to intracellular and extracellular cues…”
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Streamlining Bottom-Up Protein Identification Based on Selective Ultraviolet Photodissociation (UVPD) of Chromophore-Tagged Histidine- and Tyrosine-Containing Peptides by Aponte, Julia R, Vasicek, Lisa, Swaminathan, Jagannath, Xu, Hua, Koag, Myong Chul, Lee, Seongmin, Brodbelt, Jennifer S

“…We report a fast and highly efficient diazonium reaction that couples a nitroazobenzene chromophore to tyrosine and histidine residues, thus endowing peptides…”
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A self-assembling lanthanide molecular nanoparticle for optical imaging by Brown, Katherine A, Yang, Xiaoping, Schipper, Desmond, Hall, Justin W, DePue, Lauren J, Gnanam, Annie J, Arambula, Jonathan F, Jones, Jessica N, Swaminathan, Jagannath, Dieye, Yakhya, Vadivelu, Jamuna, Chandler, Don J, Marcotte, Edward M, Sessler, Jonathan L, Ehrlich, Lauren I R, Jones, Richard A

“…Chromophores that incorporate f-block elements have considerable potential for use in bioimaging applications because of their advantageous photophysical…”
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Lanthanide nano-drums: a new class of molecular nanoparticles for potential biomedical applications by Jones, Richard A, Gnanam, Annie J, Arambula, Jonathan F, Jones, Jessica N, Swaminathan, Jagannath, Yang, Xiaoping, Schipper, Desmond, Hall, Justin W, DePue, Lauren J, Dieye, Yakhya, Vadivelu, Jamuna, Chandler, Don J, Marcotte, Edward M, Sessler, Jonathan L, Ehrlich, Lauren I R, Brown, Katherine A

“…We are developing a new class of lanthanide-based self-assembling molecular nanoparticles as potential reporter molecules for imaging, and as multi-functional…”
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