Search Results - "Svergun, D.I."

Restoring Low Resolution Structure of Biological Macromolecules from Solution Scattering Using Simulated Annealing by Svergun, D.I.

“…A method is proposed to restore ab initio low resolution shape and internal structure of chaotically oriented particles (e.g., biological macromolecules in…”
Get full text

Structural and functional properties of mouse proNGF by Paoletti, F, Konarev, P V, Covaceuszach, S, Schwarz, E, Cattaneo, A, Lamba, D, Svergun, D I

“…The unprocessed pro-form of the NGF (nerve growth factor), proNGF (NGF precursor, without signal peptide), has been suggested to have additional functions…”
Get more information

Structural features of the single-stranded DNA-binding protein of Epstein–Barr virus by Mumtsidu, E., Makhov, A.M., Konarev, P.V., Svergun, D.I., Griffith, J.D., Tucker, P.A.

“…We report the structural features of a C-terminal deletion construct of the Epstein–Barr virus single-stranded DNA-binding protein, Balf2 (Balf2ΔC), which like…”
Get full text

sasCIF: an extension of core Crystallographic Information File for SAS by Malfois, M., Svergun, D.I.

“…Data acquisition packages developed at different small angle scattering facilities use different formats both for raw and processed data storage. To facilitate…”
Get full text

MPBuilder: A PyMOL Plugin for Building and Refinement of Solubilized Membrane Proteins Against Small Angle X-ray Scattering Data by Molodenskiy, D.S., Svergun, D.I., Mertens, H.D.T.

“…[Display omitted] •SAXS is a unique tool to study MP systems in the native-like environment.•The lack of user-friendly software hinders SAXS data…”
Get full text

Investigation of charge ratio variation in mRNA – DEAE-dextran polyplex delivery systems by Siewert, C., Haas, H., Nawroth, T., Ziller, A., Nogueira, S.S., Schroer, M.A., Blanchet, C.E., Svergun, D.I., Radulescu, A., Bates, F., Huesemann, Y., Radsak, M.P., Sahin, U., Langguth, P.

“…mRNA pharmaceuticals represent a new class of therapeutics, with applications, in cancer vaccination, tumour therapy and protein substitution. Formulations are…”
Get full text

Common architecture of nuclear receptor heterodimers on DNA direct repeat elements with different spacings by Rochel, Natacha, Ciesielski, Fabrice, Godet, Julien, Moman, Edelmiro, Roessle, Manfred, Peluso-Iltis, Carole, Moulin, Martine, Haertlein, Michael, Callow, Phil, Mély, Yves, Svergun, Dmitri I, Moras, Dino

“…A combination of SAXS, SANS and FRET is used to explore the solution structures of three different nuclear receptor heterodimeric complexes (RXR with RAR,…”
Get full text

Joint use of SAXS and SANS with high-resolution methods for macromolecular solutions by Svergun, D.I.

“…Abstract only…”
Get full text

Quaternary structure of the human Cdt1-Geminin complex regulates DNA replication licensing by De Marco, V, Gillespie, P.J, Li, A, Karantzelis, N, Christodoulou, E, Klompmaker, R, van Gerwen, S, Fish, A, Petoukhov, M.V, Iliou, M.S, Lygerou, Z, Medema, R.H, Blow, J.J, Svergun, D.I, Taraviras, S, Perrakis, A

“…All organisms need to ensure that no DNA segments are rereplicated in a single cell cycle. Eukaryotes achieve this through a process called origin licensing,…”
Get full text

Characterization of Der p 21, a new important allergen derived from the gut of house dust mites by Weghofer, M, Dall'Antonia, Y, Grote, M, Stöcklinger, A, Kneidinger, M, Balic, N, Krauth, M.-T, Fernández-Caldas, E, Thomas, W.R, Hage, M. van, Vieths, S, Spitzauer, S, Horak, F, Svergun, D.I, Konarev, P.V, Valent, P, Thalhamer, J, Keller, W, Valenta, R, Vrtala, S

“…The house dust mite (HDM) Dermatophagoides pteronyssinus is a major allergen source eliciting allergic asthma. The aim of the study was to identify new…”
Get full text

Small-Angle X-ray Scattering Study of Macrophage Migration Inhibitory Factor Complexed with Albumin by Petoukhov, M. V., Sokolov, A. V., Dadinova, L. A., Gorbunov, N. P., Svergun, D. I., Samygina, V. R.

“…Macrophage migration inhibitory factor (MIF) is a proinflammatory cytokine, which plays a pivotal role in the regulation of immune response. Hence, the search…”
Get full text

Synchrotron SAXS reveals structural organization of iron oxide nanoparticles in aqueous solutions by Shtykova, E.V., Konarev, P.V., Bronstein, L.M., Svergun, D.I.

“…Abstract only…”
Get full text

A software system for rigid-body modelling of solution scattering data by Kozin, M.B., Svergun, D.I.

“…A computer system for rigid body modelling against solution scattering data is described. Fast algorithms to compute scattering from a complex of two arbitrary…”
Get full text

Analysis of solution small-angle scattering using the program package ATSAS by Konarev, P.V., Petoukhov, M.V., Mylonas, E., Kikhney, A.G., Volkov, V.V., Svergun, D.I.

“…Abstract only…”
Get full text

Advances in the structural elucidation of Clostridium difficile toxin B using SAXS and MX techniques by Albesa-Jove, D., Bertrand, T., Brown, K.A., Svergun, D.I., von Eichel-Streiber, C., Fairweather, N.

“…Abstract only…”
Get full text

Twists and turns: a tale of two shikimate-pathway enzymes by Brown, K A, Carpenter, E P, Watson, K A, Coggins, J R, Hawkins, A R, Koch, M H J, Svergun, D I

“…We are studying two enzymes from the shikimate pathway, dehydroquinate synthase (DHQS) and 5-enolpyruvylshikimate-3-phosphate synthase (EPSPS). Both enzymes…”
Get more information

Solution scattering structural analysis of the 70 S Escherichia coli ribosome by contrast variation. I. invariants and validation of electron microscopy models 1 1Edited by M. F. Moody by Svergun, D.I, Burkhardt, N, Pedersen, J.Skov, Koch, M.H.J, Volkov, V.V, Kozin, M.B, Meerwink, W, Stuhrmann, H.B, Diedrich, G, Nierhaus, K.H

Get full text

Solution scattering structural analysis of the 70 s Escherichia coli ribosome by contrast variation. II † . A model of the ribosome and its RNA at 3.5 nm resolution 1 †Paper I in this series is the accompanying paper, Svergun et al. (1997) 1Edited by M. F. Moody by Svergun, D.I., Burkhardt, N., Pedersen, J.Skov, Koch, M.H.J., Volkov, V.V., Kozin, M.B., Meerwink, W., Stuhrmann, H.B., Diedrich, G., Nierhaus, K.H.

Get full text

A compact algorithm for evaluating linear prolate functions by Kozin, M.B., Volkov, V.V., Svergun, D.I.

“…Linear prolate functions (LPFs) are a set of bandlimited functions constructed to be invariant to the Fourier transform and orthonormal on the real line for…”
Get full text

Structural model of the 50 S subunit of Escherichia coli ribosomes from solution scattering. II. Neutron scattering study by Svergun, D I, Koch, M H, Pedersen, J S, Serdyuk, I N

“…The X-ray and neutron contrast variation data of the 50 S ribosomal subunit of Escherichia coli in solution are interpreted in the frame of a two-phase model…”
Get more information