Search Results - "Sucgang, Richard"

Meta-analysis of host transcriptional responses to SARS-CoV-2 infection reveals their manifestation in human tumors by Chen, Fengju, Zhang, Yiqun, Sucgang, Richard, Ramani, Sasirekha, Corry, David, Kheradmand, Farrah, Creighton, Chad J.

“…A deeper understanding of the molecular biology of SARS-CoV-2 infection, including the host response to the virus, is urgently needed. Commonalities exist…”
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A Functional Variomics Tool for Discovering Drug-Resistance Genes and Drug Targets by Huang, Zhiwei, Chen, Kaifu, Zhang, Jianhuai, Li, Yongxiang, Wang, Hui, Cui, Dandan, Tang, Jiangwu, Liu, Yong, Shi, Xiaomin, Li, Wei, Liu, Dan, Chen, Rui, Sucgang, Richard S., Pan, Xuewen

“…Comprehensive discovery of genetic mechanisms of drug resistance and identification of in vivo drug targets represent significant challenges. Here we present a…”
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Comparative genomics of the social amoebae Dictyostelium discoideum and Dictyostelium purpureum by Sucgang, Richard, Kuo, Alan, Tian, Xiangjun, Salerno, William, Parikh, Anup, Feasley, Christa L, Dalin, Eileen, Tu, Hank, Huang, Eryong, Barry, Kerrie, Lindquist, Erika, Shapiro, Harris, Bruce, David, Schmutz, Jeremy, Salamov, Asaf, Fey, Petra, Gaudet, Pascale, Anjard, Christophe, Babu, M Madan, Basu, Siddhartha, Bushmanova, Yulia, van der Wel, Hanke, Katoh-Kurasawa, Mariko, Dinh, Christopher, Coutinho, Pedro M, Saito, Tamao, Elias, Marek, Schaap, Pauline, Kay, Robert R, Henrissat, Bernard, Eichinger, Ludwig, Rivero, Francisco, Putnam, Nicholas H, West, Christopher M, Loomis, William F, Chisholm, Rex L, Shaulsky, Gad, Strassmann, Joan E, Queller, David C, Kuspa, Adam, Grigoriev, Igor V

“…The social amoebae (Dictyostelia) are a diverse group of Amoebozoa that achieve multicellularity by aggregation and undergo morphogenesis into fruiting bodies…”
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Oligonucleotide capture sequencing of the SARS-CoV-2 genome and subgenomic fragments from COVID-19 individuals by Doddapaneni, Harsha, Cregeen, Sara Javornik, Sucgang, Richard, Meng, Qingchang, Qin, Xiang, Avadhanula, Vasanthi, Chao, Hsu, Menon, Vipin, Nicholson, Erin, Henke, David, Piedra, Felipe-Andres, Rajan, Anubama, Momin, Zeineen, Kottapalli, Kavya, Hoffman, Kristi L, Sedlazeck, Fritz J, Metcalf, Ginger, Piedra, Pedro A, Muzny, Donna M, Petrosino, Joseph F, Gibbs, Richard A

“…The newly emerged and rapidly spreading SARS-CoV-2 causes coronavirus disease 2019 (COVID-19). To facilitate a deeper understanding of the viral biology we…”
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Polymorphic Members of the lag Gene Family Mediate Kin Discrimination in Dictyostelium by Benabentos, Rocio, Hirose, Shigenori, Sucgang, Richard, Curk, Tomaz, Katoh, Mariko, Ostrowski, Elizabeth A., Strassmann, Joan E., Queller, David C., Zupan, Blaz, Shaulsky, Gad, Kuspa, Adam

“…Self and kin discrimination are observed in most kingdoms of life and are mediated by highly polymorphic plasma membrane proteins [1–7]. Sequence polymorphism,…”
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Correction: Repurposed Transcriptomic Data Reveal Small Viral RNA Produced by Influenza Virus during Infection in Mice by Koire, Amanda, Gilbert, Brian E, Sucgang, Richard, Zechiedrich, Lynn

“…[This corrects the article DOI: 10.1371/journal.pone.0165729.]…”
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Repurposed Transcriptomic Data Reveal Small Viral RNA Produced by Influenza Virus during Infection in Mice by Koire, Amanda, Gilbert, Brian E, Sucgang, Richard, Zechiedrich, Lynn

“…Influenza virus, a highly infectious ssRNA virus, replicates in the nucleus of host cells. This unusual feature brings the possibility that the virus may…”
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Facultative cheater mutants reveal the genetic complexity of cooperation in social amoebae by Shaulsky, Gad, Santorelli, Lorenzo A, Thompson, Christopher R. L, Villegas, Elizabeth, Svetz, Jessica, Dinh, Christopher, Parikh, Anup, Sucgang, Richard, Kuspa, Adam, Strassmann, Joan E, Queller, David C

“…Cooperation is central to many major transitions in evolution, including the emergence of eukaryotic cells, multicellularity and eusociality. Cooperation can…”
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Loss of the Polyketide Synthase StlB Results in Stalk Cell Overproduction in Polysphondylium violaceum by Narita, Takaaki B, Kawabe, Yoshinori, Kin, Koryu, Gibbs, Richard A, Kuspa, Adam, Muzny, Donna M, Richards, Stephen, Strassmann, Joan E, Sucgang, Richard, Worley, Kim C, Schaap, Pauline

“…Abstract Major phenotypic innovations in social amoeba evolution occurred at the transition between the Polysphondylia and group 4 Dictyostelia, which comprise…”
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Escherichia coli DNA ligase B may mitigate damage from oxidative stress by Bodine, Truston J, Evangelista, Michael A, Chang, Huan Ting, Ayoub, Christopher A, Samuel, Buck S, Sucgang, Richard, Zechiedrich, Lynn

“…Escherichia coli encodes two DNA ligases, ligase A, which is essential under normal laboratory growth conditions, and ligase B, which is not. Here we report…”
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Relationships among Ciprofloxacin, Gatifloxacin, Levofloxacin, and Norfloxacin MICs for Fluoroquinolone-Resistant Escherichia coli Clinical Isolates by BECNEL BOYD, Lauren, MAYNARD, Merry J, MORGAN-LINNELL, Sonia K, HORTON, Lori Banks, SUCGANG, Richard, HAMILL, Richard J, ROJO JIMENEZ, Javier, VERSALOVIC, James, STEFFEN, David, ZECHIEDRICH, Lynn

“…Classifications Services AAC Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg Facebook Google+ Mendeley Reddit…”
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Novel Conserved Genotypes Correspond to Antibiotic Resistance Phenotypes of E. coli Clinical Isolates by Swick, Michelle C, Evangelista, Michael A, Bodine, Truston J, Easton-Marks, Jeremy R, Barth, Patrick, Shah, Minita J, Bormann Chung, Christina A, Stanley, Sarah, McLaughlin, Stephen F, Lee, Clarence C, Sheth, Vrunda, Doan, Quynh, Hamill, Richard J, Steffen, David, Becnel, Lauren B, Sucgang, Richard, Zechiedrich, Lynn

“…Current efforts to understand antibiotic resistance on the whole genome scale tend to focus on known genes even as high throughput sequencing strategies…”
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Sequence and analysis of chromosome 2 of Dictyostelium discoideum by Glöckner, Gernot, Dingermann, Theodor, Barrell, Bart G, Zeng, Kathy, Eichinger, Ludwig, Zhu, Baoli, Gerisch, Günther, Rajandream, Marie-Adèle, Noegel, Angelika A, de Jong, Pieter, Williams, Jeffrey G, Philippsen, Peter, Kay, Robert R, Szafranski, Karol, Schleicher, Michael, Schuster, Stephan C, Pachebat, Justin A, Kuspa, Adam, Winckler, Thomas, Bankier, Alan T, Gibbs, Richard, Sucgang, Richard, Dear, Paul H, Muzny, Donna, Lehmann, Rüdiger, Desany, Brian, Baumgart, Cornelia, Parra, Genís, Abril, Josep F, Guigó, Roderic, Kumpf, Kai, Tunggal, Budi, Cox, Edward, Quail, Michael A, Platzer, Matthias, Rosenthal, André

“…The genome of the lower eukaryote Dictyostelium discoideum comprises six chromosomes. Here we report the sequence of the largest, chromosome 2, which at 8…”
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A transcriptional profile of multicellular development in Dictyostelium discoideum by Van Driessche, Nancy, Shaw, Chad, Katoh, Mariko, Morio, Takahiro, Sucgang, Richard, Ibarra, Miroslava, Kuwayama, Hidekazu, Saito, Tamao, Urushihara, Hideko, Maeda, Mineko, Takeuchi, Ikuo, Ochiai, Hiroshi, Eaton, William, Tollett, Jeffrey, Halter, John, Kuspa, Adam, Tanaka, Yoshimasa, Shaulsky, Gad

“…A distinct feature of development in the simple eukaryote Dictyostelium discoideum is an aggregative transition from a unicellular to a multicellular phase…”
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Comparing the Dictyostelium and Entamoeba genomes reveals an ancient split in the Conosa lineage by Song, Jie, Xu, Qikai, Olsen, Rolf, Loomis, William F, Shaulsky, Gad, Kuspa, Adam, Sucgang, Richard

“…The Amoebozoa are a sister clade to the fungi and the animals, but are poorly sampled for completely sequenced genomes. The social amoeba Dictyostelium…”
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Plasmid-chromosome shuffling for non-deletion alleles in yeast by Boeke, Jef D, Pan, Xuewen, Huang, Zhiwei, Sucgang, Richard S, Lin, Yu-yi, Shi, Xiaomin

“…Here we describe a facile plasmid-chromosome shuffling technique for generating and analyzing non-deletion alleles in the yeast Saccharomyces cerevisiae. This…”
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The promise of a protist: the Dictyostelium genome project by KUSPA, Adam, SUCGANG, Richard, SHAULSKY, Gad

“…The genome of Dictyostelium discoideum is being sequenced by an international consortium and is scheduled for completion in the next few years. The sequence…”
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Conserved developmental transcriptomes in evolutionarily divergent species by Parikh, Anup, Miranda, Edward Roshan, Katoh-Kurasawa, Mariko, Fuller, Danny, Rot, Gregor, Zagar, Lan, Curk, Tomaz, Sucgang, Richard, Chen, Rui, Zupan, Blaz, Loomis, William F, Kuspa, Adam, Shaulsky, Gad

“…Evolutionarily divergent organisms often share developmental anatomies despite vast differences between their genome sequences. The social amoebae…”
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Mortality difference from Klebsiella aerogenes vs Enterobacter cloacae bloodstream infections by Chou, Andrew, Sucgang, Richard, Hamill, Richard J, Zechiedrich, Lynn, Trautner, Barbara W

“…Members of the order Enterobacterales, including , species and species, are important pathogens in healthcare-associated infections. Higher mortality has been…”
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1822. Veterans Are Special: Clinical Decision Tree Misses ESBL Status in Bacteremic Veterans by Chou, Andrew, Sucgang, Richard, Zechiedrich, Lynn, Trautner, Barbara W

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