Search Results - "Sułkowska, Joanna"

Mechanical strength of 17,134 model proteins and cysteine slipknots by Sikora, Mateusz, Sułkowska, Joanna I, Cieplak, Marek

“…A new theoretical survey of proteins' resistance to constant speed stretching is performed for a set of 17,134 proteins as described by a structure-based…”
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Energy landscape of knotted protein folding by Sułkowska, Joanna I, Noel, Jeffrey K, Onuchic, Jose N

“…Recent experiments have conclusively shown that proteins are able to fold from an unknotted, denatured polypeptide to the knotted, native state without the aid…”
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Selection of Optimal Variants of Gō-Like Models of Proteins through Studies of Stretching by Sułkowska, Joanna I., Cieplak, Marek

“…The Gō-like models of proteins are constructed based on the knowledge of the native conformation. However, there are many possible choices of a Hamiltonian for…”
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The unique cysteine knot regulates the pleotropic hormone leptin by Haglund, Ellinor, Sułkowska, Joanna I, He, Zhao, Feng, Gen-Sheng, Jennings, Patricia A, Onuchic, José N

“…Leptin plays a key role in regulating energy intake/expenditure, metabolism and hypertension. It folds into a four-helix bundle that binds to the extracellular…”
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Slipknotting upon native-like loop formation in a trefoil knot protein by Noel, Jeffrey K., Sułkowska, Joanna I., Onuchic, José N.

“…Protein knots and slipknots, mostly regarded as intriguing oddities, are gradually being recognized as significant structural motifs. Recent experimental…”
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PROSPECTS OF ASSESSING THE IMPACT OF EXTERNAL STUDENT MIGRATION ON RESTORING COUNTRY'S INTELLECTUAL POTENTIAL (THE CASE STUDY OF UKRAINE) by Mishchuk, Halyna, Roshchyk, Iryna, Sułkowska, Joanna, Vojtovič, Sergej

“…Our paper suggests a new approach to assessment of external student migration consequences. While considering the socioeconomic impact of youth intellectual…”
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miRNAs in Signal Transduction of SMAD Proteins in Breast Cancer by Sirek, Tomasz, Sirek, Agata, Borawski, Przemysław, Zmarzły, Nikola, Sułkowska, Joanna, Król-Jatręga, Katarzyna, Opławski, Marcin, Boroń, Dariusz, Chalcarz, Michał, Ossowski, Piotr, Dziobek, Konrad, Strojny, Damian, Boroń, Kacper, Janiszewska-Bil, Dominika, Grabarek, Beniamin Oskar

“…The aim of this study was to identify miRNAs that could potentially influence the activity of SMAD proteins involved in TGFβ signal transduction in five types…”
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Tightening of knots in proteins by Sułkowska, Joanna I, Sułkowski, Piotr, Szymczak, P, Cieplak, Marek

“…We perform theoretical studies of stretching of 20 proteins with knots within a coarse-grained model. The knot's ends are found to jump to well defined…”
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SOCIAL TRUST AND INSTITUTIONAL (BANK) TRUST: EMPIRICAL EVIDENCE OF INTERACTION by Buriak, Anna, Vozňáková, Iveta, Sułkowska, Joanna, Kryvych, Yana

“…This paper analyzes the interaction between interpersonal trust (as informal rules and behavior) and trust in banks (as formal rules and institutions) as well…”
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Stretching to Understand Proteins—A Survey of the Protein Data Bank by Sułkowska, Joanna I., Cieplak, Marek

“…We make a survey of resistance of 7510 proteins to mechanical stretching at constant speed as studied within a coarse-grained molecular dynamics model. We…”
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Untying Knots in Proteins by Sułkowska, Joanna I, Sułkowski, Piotr, Szymczak, Piotr, Cieplak, Marek

“…A shoelace can be readily untied by pulling its ends rather than its loops. Attempting to untie a native knot in a protein can also succeed or fail depending…”
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RUSSIAN CULTURE AND MANAGEMENT OF MEANING IN INTRODUCTION OF POLITICAL INFLUENCE IN UKRAINE by Sazhniev, Mykhailo, Sułkowska, Joanna

“…This paper investigates narratives and ideology of disinformation campaign which Russian Federation launched into information space since February 2014 when…”
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Jamming proteins with slipknots and their free energy landscape by Sułkowska, Joanna I, Sułkowski, Piotr, Onuchic, José N

“…Theoretical studies of stretching proteins with slipknots reveal a surprising growth of their unfolding times when the stretching force crosses an intermediate…”
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Knot localization in proteins by Rawdon, Eric J, Millett, Kenneth C, Sułkowska, Joanna I, Stasiak, Andrzej

“…The backbones of proteins form linear chains. In the case of some proteins, these chains can be characterized as forming linear open knots. The knot type of…”
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Predicting the order in which contacts are broken during single molecule protein stretching experiments by Sułkowska, Joanna I., Kloczkowski, Andrzej, Sen, Taner Z., Cieplak, Marek, Jernigan, Robert L.

“…We combine two methods to enable the prediction of the order in which contacts are broken under external stretching forces in single molecule experiments…”
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Genomics-aided structure prediction by Sułkowska, Joanna I, Morcos, Faruck, Weigt, Martin, Hwa, Terence, Onuchic, José N

“…We introduce a theoretical framework that exploits the ever-increasing genomic sequence information for protein structure prediction. Structure-based models…”
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Topological knots and links in proteins by Dabrowski-Tumanski, Pawel, Sulkowska, Joanna I.

“…Twenty years after their discovery, knots in proteins are now quite well understood. They are believed to be functionally advantageous and provide extra…”
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Conservation of complex knotting and slipknotting patterns in proteins by Sułkowska, Joanna I., Rawdon, Eric J., Millett, Kenneth C., Onuchic, Jose N., Stasiak, Andrzej

“…While analyzing all available protein structures for the presence of knots and slipknots, we detected a strict conservation of complex knotting patterns within…”
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Excessive sleepiness and selected aspects of functioning and the quality of life of patients suffering from obstructive sleep apnoea by Mostowik, Lidia, Padykuła, Marlena, Sułkowska, Joanna, Kuźmicz, Ilona, Kawalec-Kajstura, Ewa

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In Search of Functional Advantages of Knots in Proteins by Dabrowski-Tumanski, Pawel, Stasiak, Andrzej, Sulkowska, Joanna I

“…We analysed the structure of deeply knotted proteins representing three unrelated families of knotted proteins. We looked at the correlation between positions…”
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