Search Results - "Stubbs, Joe"

Scalable Scientific Interactive Research Computing with Project Scinco by Stubbs, J., Jamthe, A., Freeman, N., Packard, M., Curbelo, G., Hammock, C.

“…Interactive computing with Jupyter notebooks has transformed the state-of-the-art of scientific research computing. Users can perform a multitude of…”
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Prediction of whole-cell transcriptional response with machine learning by Eslami, Mohammed, Borujeni, Amin Espah, Eramian, Hamed, Weston, Mark, Zheng, George, Urrutia, Joshua, Corbet, Carolyn, Becker, Diveena, Maschhoff, Paul, Clowers, Katie, Cristofaro, Alexander, Hosseini, Hamid Doost, Gordon, D Benjamin, Dorfan, Yuval, Singer, Jedediah, Vaughn, Matthew, Gaffney, Niall, Fonner, John, Stubbs, Joe, Voigt, Christopher A, Yeung, Enoch

“…Abstract Motivation Applications in synthetic and systems biology can benefit from measuring whole-cell response to biochemical perturbations. Execution of…”
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Tapis v3 Streams API: Time‐series and data‐driven event support in science gateway infrastructure by Cleveland, Sean B., Jamthe, Anagha, Padhy, Smruti, Stubbs, Joe, Terry, Steven, Looney, Julia, Cardone, Richard, Packard, Michael, Dahan, Maytal, Jacobs, Gwen A.

“…Summary The explosion of IoT devices and sensors in recent years has led to a demand for efficiently storing, processing and analyzing time‐series data…”
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Cannabinoid hyperemesis syndrome: prevalence and management in an era of cannabis legalization by Stubbs, Justin Joe, McCallum, Richard

“…As more states legalize cannabinoid products for recreational use and medicinal purposes, the prevalence of cannabinoid hyperemesis syndrome has become…”
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Round Trip: An Automated Pipeline for Experimental Design, Execution, and Analysis by Bryce, Daniel, Goldman, Robert P, DeHaven, Matthew, Beal, Jacob, Bartley, Bryan, Nguyen, Tramy T, Walczak, Nicholas, Weston, Mark, Zheng, George, Nowak, Josh, Lee, Peter, Stubbs, Joe, Gaffney, Niall, Vaughn, Matthew W, Myers, Chris John, Moseley, Robert C, Haase, Steven, Deckard, Anastasia, Cummins, Bree, Leiby, Nick

“…Synthetic biology is a complex discipline that involves creating detailed, purpose-built designs from genetic parts. This process is often phrased as a…”
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Araport: an application platform for data discovery by Hanlon, Matthew R., Vaughn, Matthew, Mock, Stephen, Dooley, Rion, Moreira, Walter, Stubbs, Joe, Town, Chris, Miller, Jason, Krishnakumar, Vivek, Ferlanti, Erik, Pence, Eleanor

“…Summary Araport is an open‐source, online community resource for research on the Arabidopsis thaliana genome and related data. Araport is developed through a…”
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Toward Smart Scheduling in Tapis by Stubbs, Joe, Padhy, Smruti, Cardone, Richard

“…The Tapis framework provides APIs for automating job execution on remote resources, including HPC clusters and servers running in the cloud. Tapis can simplify…”
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Distributed Systems of Microservices Using Docker and Serfnode by Stubbs, Joe, Moreira, Walter, Dooley, Rion

“…We review container technology and the challenge of service discovery in micro service architectures and introduce Serf node, a fully decentralized open source…”
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CloudSec: An Extensible Automated Reasoning Framework for Cloud Security Policies by Stubbs, Joe, Padhy, Smruti, Cardone, Richard, Black, Steven

“…Users increasingly create, manage and share digital resources, including sensitive data, via cloud platforms and APIs. Platforms encode the rules governing…”
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A Decentralized Authorization and Security Framework for Distributed Research Workflows by Cardone, Richard, Padhy, Smruti, Black, Steve, Stubbs, Joe, Cleveland, Sean

“…Research challenges such as climate change and the search for habitable planets increasingly use academic and commercial computing resources distributed across…”
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A Decentralized Authorization and Security Framework for Distributed Research Workflows by Cardone, Richard, Padhy, Smruti, Black, Steven, Cleveland, Sean, Stubbs, Joe

“…Research challenges such as climate change and the search for habitable planets increasingly use academic and commercial computing resources distributed across…”
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Development of Authenticated Clients and Applications for ICICLE CI Services -- Final Report for the REHS Program, June-August, 2022 by Samar, Sahil, Chen, Mia, Karpinski, Jack, Ray, Michael, Sarin, Archita, Garcia, Christian, Lange, Matthew, Stubbs, Joe, Thomas, Mary

“…The Artificial Intelligence (AI) institute for Intelligent Cyberinfrastructure with Computational Learning in the Environment (ICICLE) is funded by the NSF to…”
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Toward Interoperable Cyberinfrastructure: Common Descriptions for Computational Resources and Applications by Stubbs, Joe, Marru, Suresh, Mejia, Daniel, Katz, Daniel S, Chard, Kyle, Dahan, Maytal, Pierce, Marlon, Zentner, Michael

“…The user-facing components of the Cyberinfrastructure (CI) ecosystem, science gateways and scientific workflow systems, share a common need of interfacing with…”
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Potent elements and tight closure in Artinian modules by Stubbs, Joe F

“…In this thesis we develop the theory of potent elements, a new method for studying the question of whether tight closure equals finitistic tight closure for…”
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The MyProxy Gateway by Dooley, Rion, Stubbs, Joe, Basney, Jim

“…In 2000, the original My Proxy server was released to provide a centralized way to securely store and delegate grid credentials. In 2009, the OAuth for My…”
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The arabidopsis information portal: an application platform for data discovery by Hanlon, Matthew R., Vaughn, Matthew, Mock, Stephen, Dooley, Rion, Moreira, Walter, Stubbs, Joe, Town, Chris, Miller, Jason, Krishnakumar, Vivek, Ferlanti, Erik, Pence, Eleanor

“…The Arabidopsis Information Portal (AIP) is an open-access online community resource for research on the Arabidopsis thaliana genome and related data. AIP is…”
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An Interactive Knowledge and Learning Environment in Smart Foodsheds by Tu, Yamei, Wang, Xiaoqi, Qiu, Rui, Shen, Han-Wei, Miller, Michelle, Rao, Jinmeng, Gao, Song, Huber, Patrick R., Hollander, Allan D., Lange, Matthew, Garcia, Christian R., Stubbs, Joe

“…The Internet of Food (IoF) is an emerging field in smart foodsheds, involving the creation of a knowledge graph (KG) about the environment, agriculture, food,…”
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