Search Results - "Strickler, Susan R."

The Sol Genomics Network (SGN)--from genotype to phenotype to breeding by Fernandez-Pozo, Noe, Menda, Naama, Edwards, Jeremy D, Saha, Surya, Tecle, Isaak Y, Strickler, Susan R, Bombarely, Aureliano, Fisher-York, Thomas, Pujar, Anuradha, Foerster, Hartmut, Yan, Aimin, Mueller, Lukas A

“…The Sol Genomics Network (SGN, http://solgenomics.net) is a web portal with genomic and phenotypic data, and analysis tools for the Solanaceae family and close…”
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Loss of CRWN nuclear proteins induces cell death and salicylic acid defense signaling by Choi, Junsik, Strickler, Susan R, Richards, Eric Jean

“…Defects in the nuclear lamina of animal cell nuclei have dramatic effects on nuclear structure and gene expression, as well as diverse physiological…”
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Genome of Solanum pimpinellifolium provides insights into structural variants during tomato breeding by Wang, Xin, Gao, Lei, Jiao, Chen, Stravoravdis, Stefanos, Hosmani, Prashant S., Saha, Surya, Zhang, Jing, Mainiero, Samantha, Strickler, Susan R., Catala, Carmen, Martin, Gregory B., Mueller, Lukas A., Vrebalov, Julia, Giovannoni, James J., Wu, Shan, Fei, Zhangjun

“…Solanum pimpinellifolium (SP) is the wild progenitor of cultivated tomato. Because of its remarkable stress tolerance and intense flavor, SP has been used as…”
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Characterizing serotonin biosynthesis in Setaria viridis leaves and its effect on aphids by Dangol, Anuma, Shavit, Reut, Yaakov, Beery, Strickler, Susan R., Jander, Georg, Tzin, Vered

“…Key message A combined transcriptomic and metabolic analysis of Setaria viridis leaves responding to aphid infestation was used to identify genes related to…”
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Natural variation for unusual host responses and flagellin-mediated immunity against Pseudomonas syringae in genetically diverse tomato accessions by Roberts, Robyn, Mainiero, Samantha, Powell, Adrian F., Liu, Alexander E., Shi, Kai, Hind, Sarah R., Strickler, Susan R., Collmer, Alan, Martin, Gregory B.

“…The interaction between tomato and Pseudomonas syringae pv tomato (Pst) is a well-developed model for investigating the molecular basis of the plant immune…”
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The Ptr1 Locus of Solanum lycopersicoides Confers Resistance to Race 1 Strains of Pseudomonas syringae pv. tomato and to Ralstonia pseudosolanacearum by Recognizing the Type III Effectors AvrRpt2 and RipBN by Mazo-Molina, Carolina, Mainiero, Samantha, Hind, Sarah R, Kraus, Christine M, Vachev, Mishi, Maviane-Macia, Felicia, Lindeberg, Magdalen, Saha, Surya, Strickler, Susan R, Feder, Ari, Giovannoni, James J, Smart, Christine D, Peeters, Nemo, Martin, Gregory B

“…Race 1 strains of pv. , which cause bacterial speck disease of tomato, are becoming increasingly common and no simply inherited genetic resistance to such…”
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De Novo Genome Sequence Assembly of Dwarf Coconut ( Cocos nucifera L. 'Catigan Green Dwarf') Provides Insights into Genomic Variation Between Coconut Types and Related Palm Species by Lantican, Darlon V, Strickler, Susan R, Canama, Alma O, Gardoce, Roanne R, Mueller, Lukas A, Galvez, Hayde F

“…We report the first whole genome sequence (WGS) assembly and annotation of a dwarf coconut variety, 'Catigan Green Dwarf' (CATD). The genome sequence was…”
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Independent evolution of ancestral and novel defenses in a genus of toxic plants ( Erysimum , Brassicaceae) by Züst, Tobias, Strickler, Susan R, Powell, Adrian F, Mabry, Makenzie E, An, Hong, Mirzaei, Mahdieh, York, Thomas, Holland, Cynthia K, Kumar, Pavan, Erb, Matthias, Petschenka, Georg, Gómez, José-María, Perfectti, Francisco, Müller, Caroline, Pires, J Chris, Mueller, Lukas A, Jander, Georg

“…Phytochemical diversity is thought to result from coevolutionary cycles as specialization in herbivores imposes diversifying selection on plant chemical…”
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Tomato receptor FLAGELLIN-SENSING 3 binds flgII-28 and activates the plant immune system by Hind, Sarah R., Strickler, Susan R., Boyle, Patrick C., Dunham, Diane M., Bao, Zhilong, O'Doherty, Inish M., Baccile, Joshua A., Hoki, Jason S., Viox, Elise G., Clarke, Christopher R., Vinatzer, Boris A., Schroeder, Frank C., Martin, Gregory B.

“…Plants and animals detect the presence of potential pathogens through the perception of conserved microbial patterns by cell surface receptors. Certain…”
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ChloroSeq, an Optimized Chloroplast RNA-Seq Bioinformatic Pipeline, Reveals Remodeling of the Organellar Transcriptome Under Heat Stress by Castandet, Benoît, Hotto, Amber M, Strickler, Susan R, Stern, David B

“…Although RNA-Seq has revolutionized transcript analysis, organellar transcriptomes are rarely assessed even when present in published datasets. Here, we…”
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PacBio-Based Mitochondrial Genome Assembly of Leucaena trichandra (Leguminosae) and an Intrageneric Assessment of Mitochondrial RNA Editing by Kovar, Lynsey, Nageswara-Rao, Madhugiri, Ortega-Rodriguez, Sealtiel, Dugas, Diana V, Straub, Shannon, Cronn, Richard, Strickler, Susan R, Hughes, Colin E, Hanley, Kathryn A, Rodriguez, Deyra N, Langhorst, Bradley W, Dimalanta, Eileen T, Bailey, C Donovan

“…Reconstructions of vascular plant mitochondrial genomes (mt-genomes) are notoriously complicated by rampant recombination that has resulted in comparatively…”
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Sequencing‐Based Bin Map Construction of a Tomato Mapping Population, Facilitating High‐Resolution Quantitative Trait Loci Detection by Gonda, Itay, Ashrafi, Hamid, Lyon, David A., Strickler, Susan R., Hulse‐Kemp, Amanda M., Ma, Qiyue, Sun, Honghe, Stoffel, Kevin, Powell, Adrian F., Futrell, Stephanie, Thannhauser, Theodore W., Fei, Zhangjun, Van Deynze, Allen E., Mueller, Lukas A., Giovannoni, James J., Foolad, Majid R.

“…Core Ideas Construction of a GBS‐based high‐resolution genetic map of a tomato RIL population Development of an analytical pipeline to localize crossover…”
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Transcriptome Analysis of Melocactus glaucescens (Cactaceae) Reveals Metabolic Changes During in vitro Shoot Organogenesis Induction by Torres-Silva, Gabriela, Correia, Ludmila Nayara Freitas, Batista, Diego Silva, Koehler, Andréa Dias, Resende, Sheila Vitória, Romanel, Elisson, Cassol, Daniela, Almeida, Ana Maria Rocha, Strickler, Susan R., Specht, Chelsea Dvorak, Otoni, Wagner Campos

“…Melocactus glaucescens is an endangered cactus highly valued for its ornamental properties. In vitro shoot production of this species provides a sustainable…”
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Aphid Resistance Segregates Independently of Cardenolide and Glucosinolate Content in an Erysimum cheiranthoides (Wormseed Wallflower) F2 Population by Mirzaei, Mahdieh, Younkin, Gordon C, Powell, Adrian F, Alani, Martin L, Strickler, Susan R, Jander, Georg

“…Plants in the genus produce both glucosinolates and cardenolides as a defense mechanism against herbivory. Two natural isolates of (wormseed wallflower)…”
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Balancing read length and sequencing depth: Optimizing Nanopore long‐read sequencing for monocots with an emphasis on the Liliales by De La Cerda, Gisel Y., Landis, Jacob B., Eifler, Evan, Hernandez, Adriana I., Li, Fay‐Wei, Zhang, Jing, Tribble, Carrie M., Karimi, Nisa, Chan, Patricia, Givnish, Thomas, Strickler, Susan R., Specht, Chelsea D.

“…Premise We present approaches used to generate long‐read Nanopore sequencing reads for the Liliales and demonstrate how modifications to standard protocols…”
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Genome sequence for the blue‐flowered Andean shrub Iochroma cyaneum reveals extensive discordance across the berry clade of Solanaceae by Powell, Adrian F., Zhang, Jing, Hauser, Duncan, Vilela, Julianne A., Hu, Alice, Gates, Daniel J., Mueller, Lukas A., Li, Fay‐Wei, Strickler, Susan R., Smith, Stacey D.

“…The tomato (Solanum lycopersicum L.) family, Solanaceae, is a model clade for a wide range of applied and basic research questions. Currently,…”
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Designing a transcriptome next-generation sequencing project for a nonmodel plant species by Strickler, Susan R., Bombarely, Aureliano, Mueller, Lukas A.

“…The application of next-generation sequencing (NGS) to transcriptomics, commonly called RNA-seq, allows the nearly complete characterization of transcriptomic…”
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Comparative genomics and phylogenetic discordance of cultivated tomato and close wild relatives by Strickler, Susan R, Bombarely, Aureliano, Munkvold, Jesse D, York, Thomas, Menda, Naama, Martin, Gregory B, Mueller, Lukas A

“…Background. Studies of ancestry are difficult in the tomato because it crosses with many wild relatives and species in the tomato clade that have diverged very…”
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Identification of a Candidate Gene in Solanum habrochaites for Resistance to a Race 1 Strain of Pseudomonas syringae pv. tomato by Bao, Zhilong, Meng, Fanhong, Strickler, Susan R., Dunham, Diane M., Munkvold, Kathy R., Martin, Gregory B.

“…Bacterial speck disease caused by Pseudomonas syringae pv. tomato (Pst) is a persistent problem on tomato (Solanum lycopersicum L.). Resistance against race 0…”
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Rapid defense responses in maize leaves induced by Spodoptera exigua caterpillar feeding by Tzin, Vered, Hojo, Yuko, Strickler, Susan R., Bartsch, Lee J., Archer, Cairo M., Ahern, Kevin R., Zhou, Shaoqun, Christensen, Shawn A., Galis, Ivan, Mueller, Lukas A., Jander, Georg

“…Insects such as the beet armyworm (Spodoptera exigua) cause extensive damage to maize (Zea mays). Maize plants respond by triggering defense signaling, changes…”
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