Search Results - "Straub, Shannon C K"

Repeated translocation of a gene cassette drives sex-chromosome turnover in strawberries by Tennessen, Jacob A, Wei, Na, Straub, Shannon C K, Govindarajulu, Rajanikanth, Liston, Aaron, Ashman, Tia-Lynn

“…Turnovers of sex-determining systems represent important diversifying forces across eukaryotes. Shifts in sex chromosomes-but conservation of the master…”
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Navigating the tip of the genomic iceberg: Next-generation sequencing for plant systematics by Straub, Shannon C. K., Parks, Matthew, Weitemier, Kevin, Fishbein, Mark, Cronn, Richard C., Liston, Aaron

“…Premise of the study: Just as Sanger sequencing did more than 20 years ago, next-generation sequencing (NGS) is poised to revolutionize plant systematics. By…”
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Hyb-Seq: Combining Target Enrichment and Genome Skimming for Plant Phylogenomics by Weitemier, Kevin, Straub, Shannon C. K, Cronn, Richard C, Fishbein, Mark, Schmickl, Roswitha, McDonnell, Angela, Liston, Aaron

“…Premise of the study: Hyb-Seq, the combination of target enrichment and genome skimming, allows simultaneous data collection for low-copy nuclear genes and…”
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Building a model: developing genomic resources for common milkweed (Asclepias syriaca) with low coverage genome sequencing by Straub, Shannon C K, Fishbein, Mark, Livshultz, Tatyana, Foster, Zachary, Parks, Matthew, Weitemier, Kevin, Cronn, Richard C, Liston, Aaron

“…Milkweeds (Asclepias L.) have been extensively investigated in diverse areas of evolutionary biology and ecology; however, there are few genetic resources…”
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Evolution on the backbone: Apocynaceae phylogenomics and new perspectives on growth forms, flowers, and fruits by Fishbein, Mark, Livshultz, Tatyana, Straub, Shannon C. K., Simões, André O., Boutte, Julien, McDonnell, Angela, Foote, Abbey

“…Premise of the Study We provide the largest phylogenetic analyses to date of Apocynaceae in terms of taxa and molecular data as a framework for analyzing the…”
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Evolution at the tips: Asclepias phylogenomics and new perspectives on leaf surfaces by Fishbein, Mark, Straub, Shannon C. K., Boutte, Julien, Hansen, Kimberly, Cronn, Richard C., Liston, Aaron

“…Premise of the Study Leaf surface traits, such as trichome density and wax production, mediate important ecological processes such as anti‐herbivory defense…”
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Evolution of pyrrolizidine alkaloid biosynthesis in Apocynaceae: revisiting the defence de-escalation hypothesis by Livshultz, Tatyana, Kaltenegger, Elisabeth, Straub, Shannon C. K., Weitemier, Kevin, Hirsch, Elliot, Koval, Khrystyna, Mema, Lumi, Liston, Aaron

“…Plants produce specialized metabolites for their defence. However, specialist herbivores adapt to these compounds and use them for their own benefit. Plants…”
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Phylogenetic marker development for target enrichment from transcriptome and genome skim data: the pipeline and its application in southern African Oxalis (Oxalidaceae) by Schmickl, Roswitha, Liston, Aaron, Zeisek, Vojtěch, Oberlander, Kenneth, Weitemier, Kevin, Straub, Shannon C. K., Cronn, Richard C., Dreyer, Léanne L., Suda, Jan

“…Phylogenetics benefits from using a large number of putatively independent nuclear loci and their combination with other sources of information, such as the…”
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Horizontal transfer of DNA from the mitochondrial to the plastid genome and its subsequent evolution in milkweeds (apocynaceae) by Straub, Shannon C K, Cronn, Richard C, Edwards, Christopher, Fishbein, Mark, Liston, Aaron

“…Horizontal gene transfer (HGT) of DNA from the plastid to the nuclear and mitochondrial genomes of higher plants is a common phenomenon; however, plastid…”
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Phylogenetic signal detection from an ancient rapid radiation: Effects of noise reduction, long-branch attraction, and model selection in crown clade Apocynaceae by Straub, Shannon C.K., Moore, Michael J., Soltis, Pamela S., Soltis, Douglas E., Liston, Aaron, Livshultz, Tatyana

“…[Display omitted] •Whole plastome sequences were assembled for 12 species of Apocynaceae.•Apocynaceae plastomes are similar and highly conserved except in…”
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Intragenomic polymorphisms among high-copy loci: a genus-wide study of nuclear ribosomal DNA in Asclepias (Apocynaceae) by Weitemier, Kevin, Straub, Shannon C K, Fishbein, Mark, Liston, Aaron

“…Despite knowledge that concerted evolution of high-copy loci is often imperfect, studies that investigate the extent of intragenomic polymorphisms and…”
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Molecular phylogenetics of Amorpha (Fabaceae): An evaluation of monophyly, species relationships, and polyploid origins by Straub, Shannon C.K., Doyle, Jeff J.

“…[Display omitted] •The evolutionary history of Amorpha was reconstructed using plastid and nuclear DNA.•Plastid and nuclear analyses conflicted as to whether…”
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A draft genome and transcriptome of common milkweed ( Asclepias syriaca ) as resources for evolutionary, ecological, and molecular studies in milkweeds and Apocynaceae by Weitemier, Kevin, Straub, Shannon C K, Fishbein, Mark, Bailey, C Donovan, Cronn, Richard C, Liston, Aaron

“…Milkweeds ( ) are used in wide-ranging studies including floral development, pollination biology, plant-insect interactions and co-evolution, secondary…”
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Conservation genetics of Amorpha georgiana (Fabaceae), an endangered legume of the Southeastern United States by Straub, Shannon C.K, Doyle, Jeff J

“…Amorpha georgiana (Fabaceae) is an endangered legume species found in longleaf pine savannas in the Southeastern United States. Approximately 900 individuals…”
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Settling a family feud: a high‐level phylogenomic framework for the Gentianales based on 353 nuclear genes and partial plastomes by Antonelli, Alexandre, Clarkson, James J., Kainulainen, Kent, Maurin, Olivier, Brewer, Grace E., Davis, Aaron P., Epitawalage, Niroshini, Goyder, David J., Livshultz, Tatyana, Persson, Claes, Pokorny, Lisa, Straub, Shannon C. K., Struwe, Lena, Zuntini, Alexandre R., Forest, Félix, Baker, William J.

“…Premise Comprising five families that vastly differ in species richness—ranging from Gelsemiaceae with 13 species to the Rubiaceae with 13,775 species—members…”
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NGS-Indel Coder: A pipeline to code indel characters in phylogenomic data with an example of its application in milkweeds (Asclepias) by Boutte, Julien, Fishbein, Mark, Liston, Aaron, Straub, Shannon C.K.

“…[Display omitted] •Most phylogenomic analyses only utilize single nucleotide polymorphisms, no indels.•NGS-Indel Coder was developed to detect and omit…”
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Development of microsatellite markers in Lupinus luteus (Fabaceae) and cross-species amplification in other lupine species by Gonzalez, Lorena B. Parra, Straub, Shannon C.K, Doyle, Jeff J, Ortega, Paula E. Mora, Garrido, Haroldo E. Salvo, Butler, Iván J. Maureira

“…Premise of the study: Microsatellite primers were developed in Lupinus luteus L., an emerging temperate protein crop, to investigate genetic diversity,…”
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Draft Genome Sequence of Mentha longifolia and Development of Resources for Mint Cultivar Improvement by Vining, Kelly J., Johnson, Sean R., Ahkami, Amirhossein, Lange, Iris, Parrish, Amber N., Trapp, Susan C., Croteau, Rodney B., Straub, Shannon C.K., Pandelova, Iovanna, Lange, B. Markus

“…The genus Mentha encompasses mint species cultivated for their essential oils, which are formulated into a vast array of consumer products. Desirable oil…”
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Enabling evolutionary studies at multiple scales in Apocynaceae through Hyb‐Seq by Straub, Shannon C. K., Boutte, Julien, Fishbein, Mark, Livshultz, Tatyana

“…Premise Apocynaceae is the 10th largest flowering plant family and a focus for study of plant–insect interactions, especially as mediated by secondary…”
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Characterization of 12 polymorphic microsatellite markers for Georgia false indigo (Amorpha georgiana Wilbur var. georgiana), an endangered species, and their utility in other dwarf Amorpha L. species by STRAUB, SHANNON C.K, BOGDANOWICZ, STEVEN M, DOYLE, JEFF J

“…In order to facilitate the addition of a genetic component to conservation management plans for Georgia false indigo (Amorpha georgiana var. georgiana), a rare…”
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