Search Results - "Stoeck, Thorsten"

Supervised machine learning outperforms taxonomy‐based environmental DNA metabarcoding applied to biomonitoring by Cordier, Tristan, Forster, Dominik, Dufresne, Yoann, Martins, Catarina I. M., Stoeck, Thorsten, Pawlowski, Jan

“…Biodiversity monitoring is the standard for environmental impact assessment of anthropogenic activities. Several recent studies showed that high‐throughput…”
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The Tara Oceans voyage reveals global diversity and distribution patterns of marine planktonic ciliates by Gimmler, Anna, Korn, Ralf, de Vargas, Colomban, Audic, Stéphane, Stoeck, Thorsten

“…Illumina reads of the SSU-rDNA-V9 region obtained from the circumglobal Tara Oceans expedition allow the investigation of protistan plankton diversity patterns…”
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An integrative approach sheds new light onto the systematics and ecology of the widespread ciliate genus Coleps (Ciliophora, Prostomatea) by Pröschold, Thomas, Rieser, Daniel, Darienko, Tatyana, Nachbaur, Laura, Kammerlander, Barbara, Qian, Kuimei, Pitsch, Gianna, Bruni, Estelle Patricia, Qu, Zhishuai, Forster, Dominik, Rad-Menendez, Cecilia, Posch, Thomas, Stoeck, Thorsten, Sonntag, Bettina

“…Species of the genus Coleps are one of the most common planktonic ciliates in lake ecosystems. The study aimed to identify the phenotypic plasticity and…”
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Multiple marker parallel tag environmental DNA sequencing reveals a highly complex eukaryotic community in marine anoxic water by STOECK, THORSTEN, BASS, DAVID, NEBEL, MARKUS, CHRISTEN, RICHARD, JONES, MEREDITH D. M., BREINER, HANS-WERNER, RICHARDS, THOMAS A.

“…Sequencing of ribosomal DNA clone libraries amplified from environmental DNA has revolutionized our understanding of microbial eukaryote diversity and ecology…”
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Comparing the Hyper-Variable V4 and V9 Regions of the Small Subunit rDNA for Assessment of Ciliate Environmental Diversity by Dunthorn, Micah, Klier, Julia, Bunge, John, Stoeck, Thorsten

“…The hyper‐variable V4 and V9 regions of the small subunit (SSU) rDNA have been targeted for assessing environmental diversity of microbial eukaryotes using…”
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Environmental DNA metabarcoding of benthic bacterial communities indicates the benthic footprint of salmon aquaculture by Stoeck, Thorsten, Frühe, Larissa, Forster, Dominik, Cordier, Tristan, Martins, Catarina I.M., Pawlowski, Jan

“…We evaluated benthic bacterial communities as bioindicators in environmental impact assessments of salmon aquaculture, a rapidly growing sector of seafood…”
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CBOL protist working group: barcoding eukaryotic richness beyond the animal, plant, and fungal kingdoms by Pawlowski, Jan, Audic, Stéphane, Adl, Sina, Bass, David, Belbahri, Lassaâd, Berney, Cédric, Bowser, Samuel S, Cepicka, Ivan, Decelle, Johan, Dunthorn, Micah, Fiore-Donno, Anna Maria, Gile, Gillian H, Holzmann, Maria, Jahn, Regine, Jirků, Miloslav, Keeling, Patrick J, Kostka, Martin, Kudryavtsev, Alexander, Lara, Enrique, Lukeš, Julius, Mann, David G, Mitchell, Edward A D, Nitsche, Frank, Romeralo, Maria, Saunders, Gary W, Simpson, Alastair G B, Smirnov, Alexey V, Spouge, John L, Stern, Rowena F, Stoeck, Thorsten, Zimmermann, Jonas, Schindel, David, de Vargas, Colomban

“…Collection details including locality, date, and (as far as possible) habitat characteristics must also be provided, accompanied in parasitic and symbiotic…”
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Comparing quantile regression spline analyses and supervised machine learning for environmental quality assessment at coastal marine aquaculture installations by Leontidou, Kleopatra, Rubel, Verena, Stoeck, Thorsten

“…Organic enrichment associated with marine finfish aquaculture is a local stressor of marine coastal ecosystems. To maintain ecosystem services, the…”
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Robustness, sensitivity and reproducibility of eDNA metabarcoding as an environmental biomonitoring tool in coastal salmon aquaculture – An inter-laboratory study by Dully, Verena, Balliet, Heinrich, Frühe, Larissa, Däumer, Martin, Thielen, Alexander, Gallie, Sheena, Berrill, Iain, Stoeck, Thorsten

“…•Bacteria are reliable bioindicators for environmental monitoring in aquaculture.•Bacterial ASVs mirror Infaunal Quality Index obtained from…”
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Ciliate diversity and distribution patterns in the sediments of a seamount and adjacent abyssal plains in the tropical Western Pacific Ocean by Zhao, Feng, Filker, Sabine, Stoeck, Thorsten, Xu, Kuidong

“…Benthic ciliates and the environmental factors shaping their distribution are far from being completely understood. Likewise, deep-sea systems are amongst the…”
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Seasonality of Planktonic Freshwater Ciliates: Are Analyses Based on V9 Regions of the 18S rRNA Gene Correlated With Morphospecies Counts? by Pitsch, Gianna, Bruni, Estelle Patricia, Forster, Dominik, Qu, Zhishuai, Sonntag, Bettina, Stoeck, Thorsten, Posch, Thomas

“…Ciliates represent central nodes in freshwater planktonic food webs, and many species show pronounced seasonality, with short-lived maxima of a few dominant…”
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Protistan diversity in a permanently stratified meromictic lake (Lake Alatsee, SW Germany) by Oikonomou, Andreas, Filker, Sabine, Breiner, Hans-Werner, Stoeck, Thorsten

“…Summary Protists play a crucial role for ecosystem function(ing) and oxygen is one of the strongest barriers against their local dispersal. However, protistan…”
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Massively parallel tag sequencing reveals the complexity of anaerobic marine protistan communities by Stoeck, Thorsten, Behnke, Anke, Christen, Richard, Amaral-Zettler, Linda, Rodriguez-Mora, Maria J, Chistoserdov, Andrei, Orsi, William, Edgcomb, Virginia P

“…Recent advances in sequencing strategies make possible unprecedented depth and scale of sampling for molecular detection of microbial diversity. Two major…”
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High diversity of protistan plankton communities in remote high mountain lakes in the European Alps and the Himalayan mountains by Kammerlander, Barbara, Breiner, Hans-Werner, Filker, Sabine, Sommaruga, Ruben, Sonntag, Bettina, Stoeck, Thorsten

“…We analyzed the genetic diversity (V4 region of the 18S rRNA) of planktonic microbial eukaryotes in four high mountain lakes including two remote biogeographic…”
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A Comparison of Different Ciliate Metabarcode Genes as Bioindicators for Environmental Impact Assessments of Salmon Aquaculture by Forster, Dominik, Filker, Sabine, Kochems, Rebecca, Breiner, Hans‐Werner, Cordier, Tristan, Pawlowski, Jan, Stoeck, Thorsten

“…Ciliates are powerful indicators for monitoring the impact of aquaculture and other industrial activities in the marine environment. Here, we tested the…”
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Nanopore duplex sequencing as an alternative to Illumina MiSeq sequencing for eDNA-based biomonitoring of coastal aquaculture impacts by Stoeck, Thorsten, Katzenmeier, Sven Nicolai, Breiner, Hans-Werner, Rubel, Verena

“…Oxford Nanopore Technologies has recently launched a duplex sequencing strategy and announced an improved error rate which is in a similar order of magnitude…”
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Mining environmental high‐throughput sequence data sets to identify divergent amplicon clusters for phylogenetic reconstruction and morphotype visualization by Gimmler, Anna, Stoeck, Thorsten

“…Environmental high‐throughput sequencing (envHTS) is a very powerful tool, which in protistan ecology is predominantly used for the exploration of diversity…”
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The importance of sea ice for exchange of habitat-specific protist communities in the Central Arctic Ocean by Hardge, Kristin, Peeken, Ilka, Neuhaus, Stefan, Lange, Benjamin A., Stock, Alexandra, Stoeck, Thorsten, Weinisch, Lea, Metfies, Katja

“…Sea ice is one of the main features influencing the Arctic marine protist community composition and diversity in sea ice and sea water. We analyzed protist…”
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Assessing ecological status in karstic lakes through the integration of phytoplankton functional groups, morphological approach and environmental DNA metabarcoding by Hanžek, Nikola, Gligora Udovič, Marija, Kajan, Katarina, Borics, Gábor, Várbíró, Gábor, Stoeck, Thorsten, Žutinić, Petar, Orlić, Sandi, Stanković, Igor

“…[Display omitted] •A comparison of morphology and eDNA-based phytoplankton analysis was performed.•The Croatian natural karst lakes were classified in Good or…”
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Diatom diversity through HTS-metabarcoding in coastal European seas by Piredda, Roberta, Claverie, Jean-Michel, Decelle, Johan, de Vargas, Colomban, Dunthorn, Micah, Edvardsen, Bente, Eikrem, Wenche, Forster, Dominik, Kooistra, Wiebe H. C. F., Logares, Ramiro, Massana, Ramon, Montresor, Marina, Not, Fabrice, Ogata, Hiroyuki, Pawlowski, Jan, Romac, Sarah, Sarno, Diana, Stoeck, Thorsten, Zingone, Adriana

“…Diatoms constitute a diverse lineage of unicellular organisms abundant and ecologically important in aquatic ecosystems. Compared to other protists, their…”
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