Search Results - "Steven H. D. Haddock"

Broad phylogenomic sampling improves resolution of the animal tree of life by Dunn, Casey W, Hejnol, Andreas, Matus, David Q, Pang, Kevin, Browne, William E, Smith, Stephen A, Seaver, Elaine, Rouse, Greg W, Obst, Matthias, Edgecombe, Gregory D, Sørensen, Martin V, Haddock, Steven H. D, Schmidt-Rhaesa, Andreas, Okusu, Akiko, Kristensen, Reinhardt Møbjerg, Wheeler, Ward C, Martindale, Mark Q, Giribet, Gonzalo

“…Long-held ideas regarding the evolutionary relationships among animals have recently been upended by sometimes controversial hypotheses based largely on…”
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Phylogenomic Analyses Support Traditional Relationships within Cnidaria by Zapata, Felipe, Goetz, Freya E, Smith, Stephen A, Howison, Mark, Siebert, Stefan, Church, Samuel H, Sanders, Steven M, Ames, Cheryl Lewis, McFadden, Catherine S, France, Scott C, Daly, Marymegan, Collins, Allen G, Haddock, Steven H D, Dunn, Casey W, Cartwright, Paulyn

“…Cnidaria, the sister group to Bilateria, is a highly diverse group of animals in terms of morphology, lifecycles, ecology, and development. How this diversity…”
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Recurrent jellyfish blooms are a consequence of global oscillations by Condon, Robert H., Duarte, Carlos M., Pitt, Kylie A., Robinson, Kelly L, Lucas, Cathy H., Sutherland, Kelly R., Mianzan, Hermes W., Bogeberg, Molly, Purcell, Jennifer E., Decker, Mary Beth, Uye, Shin-ichi, Madin, Laurence P., Brodeur, Richard D., Haddock, Steven H. D., Malej, Alenka, Parry, Gregory D., Eriksen, Elena, Quiñones, Javier, Acha, Marcelo, Harvey, Michel, Arthur, James M., Graham, William M.

“…A perceived recent increase in global jellyfish abundance has been portrayed as a symptom of degraded oceans. This perception is based primarily on a few case…”
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Characterizing the secret diets of siphonophores (Cnidaria: Hydrozoa) using DNA metabarcoding by Damian-Serrano, Alejandro, Hetherington, Elizabeth D, Choy, C Anela, Haddock, Steven H D, Lapides, Alexandra, Dunn, Casey W

“…Siphonophores (Cnidaria: Hydrozoa) are abundant and diverse gelatinous predators in open-ocean ecosystems. Due to limited access to the midwater, little is…”
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Honing in on bioluminescent milky seas from space by Miller, Steven D., Haddock, Steven H. D., Straka, William C., Seaman, Curtis J., Combs, Cynthia L., Wang, Menghua, Shi, Wei, Nam, SungHyun

“…Milky seas are a rare form of marine bioluminescence where the nocturnal ocean surface produces a widespread, uniform and steady whitish glow. Mariners have…”
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A comparison across non-model animals suggests an optimal sequencing depth for de novo transcriptome assembly by Francis, Warren R, Christianson, Lynne M, Kiko, Rainer, Powers, Meghan L, Shaner, Nathan C, Haddock, Steven H D

“…The lack of genomic resources can present challenges for studies of non-model organisms. Transcriptome sequencing offers an attractive method to gather…”
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Systematic Distribution of Bioluminescence in Marine Animals: A Species-Level Inventory by Claes, Julien M, Haddock, Steven H D, Coubris, Constance, Mallefet, Jérôme

“…Bioluminescence is the production of visible light by an organism. This phenomenon is particularly widespread in marine animals, especially in the deep sea…”
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Occurrence of Isopenicillin-N-Synthase Homologs in Bioluminescent Ctenophores and Implications for Coelenterazine Biosynthesis by Francis, Warren R, Shaner, Nathan C, Christianson, Lynne M, Powers, Meghan L, Haddock, Steven H D

“…The biosynthesis of the luciferin coelenterazine has remained a mystery for decades. While not all organisms that use coelenterazine appear to make it…”
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Ancient gene linkages support ctenophores as sister to other animals by Schultz, Darrin T., Haddock, Steven H. D., Bredeson, Jessen V., Green, Richard E., Simakov, Oleg, Rokhsar, Daniel S.

“…A central question in evolutionary biology is whether sponges or ctenophores (comb jellies) are the sister group to all other animals. These alternative…”
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Non-excitable fluorescent protein orthologs found in ctenophores by Francis, Warren R, Christianson, Lynne M, Powers, Meghan L, Schnitzler, Christine E, D Haddock, Steven H

“…Fluorescent proteins are optically active proteins found across many clades in metazoans. A fluorescent protein was recently identified in a ctenophore, but…”
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Deep pelagic food web structure as revealed by in situ feeding observations by Choy, C. Anela, Haddock, Steven H. D., Robison, Bruce H.

“…Food web linkages, or the feeding relationships between species inhabiting a shared ecosystem, are an ecological lens through which ecosystem structure and…”
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Quantification of bioluminescence from the surface to the deep sea demonstrates its predominance as an ecological trait by Martini, Séverine, Haddock, Steven H. D.

“…The capability of animals to emit light, called bioluminescence, is considered to be a major factor in ecological interactions. Because it occurs across…”
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Fluorescent proteins function as a prey attractant: experimental evidence from the hydromedusa Olindias formosus and other marine organisms by Haddock, Steven H D, Dunn, Casey W

“…Although proteins in the green fluorescent protein family (GFPs) have been discovered in a wide array of taxa, their ecological functions in these organisms…”
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The hidden biology of sponges and ctenophores by Dunn, Casey W., Leys, Sally P., Haddock, Steven H.D.

“…•Ctenophores or sponges are the sister group to all other animals.•Biases hide some complex traits in these animals and make them appear simpler than they…”
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Can vertical migrations of dinoflagellates explain observed bioluminescence patterns during an upwelling event in Monterey Bay, California? by Shulman, Igor, Penta, Bradley, Moline, Mark A., Haddock, Steven H. D., Anderson, Stephanie, Oliver, Matthew J., Sakalaukus, Peter

“…Extensive AUVs surveys showed that during the development of upwelling, bioluminescent dinoflagellates from the northern part of the Monterey Bay, California…”
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Differential gene expression in the siphonophore Nanomia bijuga (Cnidaria) assessed with multiple next-generation sequencing workflows by Siebert, Stefan, Robinson, Mark D, Tintori, Sophia C, Goetz, Freya, Helm, Rebecca R, Smith, Stephen A, Shaner, Nathan, Haddock, Steven H D, Dunn, Casey W

“…We investigated differential gene expression between functionally specialized feeding polyps and swimming medusae in the siphonophore Nanomia bijuga (Cnidaria)…”
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Best practices for scientific computing by Wilson, Greg, Aruliah, D A, Brown, C Titus, Chue Hong, Neil P, Davis, Matt, Guy, Richard T, Haddock, Steven H D, Huff, Kathryn D, Mitchell, Ian M, Plumbley, Mark D, Waugh, Ben, White, Ethan P, Wilson, Paul

“…We describe a set of best practices for scientific software development, based on research and experience, that will improve scientists' productivity and the…”
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Bioluminescent and Red-Fluorescent Lures in a Deep-Sea Siphonophore by Haddock, Steven H. D, Dunn, Casey W, Pugh, Philip R, Schnitzler, Christine E

“…Bioluminescence (light production) and fluorescence (re-emission of absorbed radiation as light) are found in an unaccountably diverse array of marine…”
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Biochemical characterization of diverse deep-sea anthozoan bioluminescence systems by Bessho-Uehara, Manabu, Francis, Warren R., Haddock, Steven H. D.

“…Bioluminescence, light produced by living organisms, is a common trait in the ocean. In benthic ecosystems in the deep-sea, octocorals are some of the most…”
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The Genome of the Ctenophore Mnemiopsis leidyi and Its Implications for Cell Type Evolution by Ryan, Joseph F., Pang, Kevin, Schnitzler, Christine E., Nguyen, Anh-Dao, Moreland, R. Travis, Simmons, David K., Koch, Bernard J., Francis, Warren R., Havlak, Paul, Smith, Stephen A., Putnam, Nicholas H., Haddock, Steven H. D., Dunn, Casey W., Wolfsberg, Tyra G., Mullikin, James C., Martindale, Mark Q., Baxevanis, Andreas D.

“…An understanding of ctenophore biology is critical for reconstructing events that occurred early in animal evolution. Toward this goal, we have sequenced,…”
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