Search Results - "Stephens, Melissa T."

High-quality genetic mapping with ddRADseq in the non-model tree Quercus rubra by Konar, Arpita, Choudhury, Olivia, Bullis, Rebecca, Fiedler, Lauren, Kruser, Jacqueline M, Stephens, Melissa T, Gailing, Oliver, Schlarbaum, Scott, Coggeshall, Mark V, Staton, Margaret E, Carlson, John E, Emrich, Scott, Romero-Severson, Jeanne

“…Restriction site associated DNA sequencing (RADseq) has the potential to be a broadly applicable, low-cost approach for high-quality genetic linkage mapping in…”
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An SNP-based second-generation genetic map of Daphnia magna and its application to QTL analysis of phenotypic traits by Routtu, Jarkko, Hall, Matthew D, Albere, Brian, Beisel, Christian, Bergeron, R Daniel, Chaturvedi, Anurag, Choi, Jeong-Hyeon, Colbourne, John, De Meester, Luc, Stephens, Melissa T, Stelzer, Claus-Peter, Solorzano, Eleanne, Thomas, W Kelley, Pfrender, Michael E, Ebert, Dieter

“…Although Daphnia is increasingly recognized as a model for ecological genomics and biomedical research, there is, as of yet, no high-resolution genetic map for…”
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Quality control recommendations for RNASeq using FFPE samples based on pre-sequencing lab metrics and post-sequencing bioinformatics metrics by Liu, Yuanhang, Bhagwate, Aditya, Winham, Stacey J, Stephens, Melissa T, Harker, Brent W, McDonough, Samantha J, Stallings-Mann, Melody L, Heinzen, Ethan P, Vierkant, Robert A, Hoskin, Tanya L, Frost, Marlene H, Carter, Jodi M, Pfrender, Michael E, Littlepage, Laurie, Radisky, Derek C, Cunningham, Julie M, Degnim, Amy C, Wang, Chen

“…Formalin-fixed, paraffin-embedded (FFPE) tissues have many advantages for identification of risk biomarkers, including wide availability and potential for…”
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Inversion Genotyping in the Anopheles gambiae Complex Using High-Throughput Array and Sequencing Platforms by Love, R Rebecca, Pombi, Marco, Guelbeogo, Moussa W, Campbell, Nathan R, Stephens, Melissa T, Dabire, Roch K, Costantini, Carlo, Della Torre, Alessandra, Besansky, Nora J

“…Chromosomal inversion polymorphisms have special importance in the complex of malaria vector mosquitoes, due to their role in local adaptation and range…”
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High-Throughput Genotyping of Common Chromosomal Inversions in the Afrotropical Malaria Mosquito Anopheles Funestus by Lukindu, Martin, Love, R. Rebecca, Guelbeogo, Moussa W., Small, Scott T., Stephens, Melissa T., Campbell, Nathan R., Sagnon, N’Fale, Costantini, Carlo, Besansky, Nora J.

“…Polymorphic chromosomal inversions have been implicated in local adaptation. In anopheline mosquitoes, inversions also contribute to epidemiologically relevant…”
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ColoType: a forty gene signature for consensus molecular subtyping of colorectal cancer tumors using whole-genome assay or targeted RNA-sequencing by Buechler, Steven A., Stephens, Melissa T., Hummon, Amanda B., Ludwig, Katelyn, Cannon, Emily, Carter, Tonia C., Resnick, Jeffrey, Gökmen-Polar, Yesim, Badve, Sunil S.

“…Colorectal cancer (CRC) tumors can be partitioned into four biologically distinct consensus molecular subtypes (CMS1-4) using gene expression. Evidence is…”
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Genome-wide profiling of 24 hr diel rhythmicity in the water flea, Daphnia pulex: network analysis reveals rhythmic gene expression and enhances functional gene annotation by Rund, Samuel S C, Yoo, Boyoung, Alam, Camille, Green, Taryn, Stephens, Melissa T, Zeng, Erliang, George, Gary F, Sheppard, Aaron D, Duffield, Giles E, Milenković, Tijana, Pfrender, Michael E

“…Marine and freshwater zooplankton exhibit daily rhythmic patterns of behavior and physiology which may be regulated directly by the light:dark (LD) cycle…”
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Discovery and Structural Optimization of Acridones as Broad-Spectrum Antimalarials by Dodean, Rozalia A, Kancharla, Papireddy, Li, Yuexin, Melendez, Victor, Read, Lisa, Bane, Charles E, Vesely, Brian, Kreishman-Deitrick, Mara, Black, Chad, Li, Qigui, Sciotti, Richard J, Olmeda, Raul, Luong, Thu-Lan, Gaona, Heather, Potter, Brittney, Sousa, Jason, Marcsisin, Sean, Caridha, Diana, Xie, Lisa, Vuong, Chau, Zeng, Qiang, Zhang, Jing, Zhang, Ping, Lin, Hsiuling, Butler, Kirk, Roncal, Norma, Gaynor-Ohnstad, Lacy, Leed, Susan E, Nolan, Christina, Huezo, Stephanie J, Rasmussen, Stephanie A, Stephens, Melissa T, Tan, John C, Cooper, Roland A, Smilkstein, Martin J, Pou, Sovitj, Winter, Rolf W, Riscoe, Michael K, Kelly, Jane X

“…Malaria remains one of the deadliest diseases in the world today. Novel chemoprophylactic and chemotherapeutic antimalarials are needed to support the renewed…”
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Evaluating cell type deconvolution in FFPE breast tissue: application to benign breast disease by Liu, Yuanhang, Vierkant, Robert A, Bhagwate, Aditya, Jons, William A, Stallings-Mann, Melody L, McCauley, Bryan M, Carter, Jodi M, Stephens, Melissa T, Pfrender, Michael E, Littlepage, Laurie E, Radisky, Derek C, Cunningham, Julie M, Degnim, Amy C, Winham, Stacey J, Wang, Chen

“…Abstract Transcriptome profiling using RNA sequencing (RNA-seq) of bulk formalin-fixed paraffin-embedded (FFPE) tissue blocks is a standard method in…”
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Genome-wide polymorphisms and development of a microarray platform to detect genetic variations in Plasmodium yoelii by Nair, Sethu C., Pattaradilokrat, Sittiporn, Zilversmit, Martine M., Dommer, Jennifer, Nagarajan, Vijayaraj, Stephens, Melissa T., Xiao, Wenming, Tan, John C., Su, Xin-zhuan

“…Genome-wide genotyping single nucleotide polymorphism (SNP) and detection of genetic crossovers in Plasmodum yoelii using a microarray. •Genome sequencing of…”
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