Search Results - "Stepanauskas, Ramūnas"

Single cell genomics: an individual look at microbes by Stepanauskas, Ramunas

“…Highlights ► Single cell genomics (SCG) analyzes DNA at the most fundamental level of biology. ► SCG uncovers metabolic potential of the uncultured…”
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Summer Inputs of Riverine Nutrients to the Baltic Sea: Bioavailability and Eutrophication Relevance by Stepanauskas, Ramūnas, Niels O. G. Jørgensen, Eigaard, Ole R., Žvikas, Audrius, Tranvik, Lars J., Leonardson, Lars

“…Most nitrogen and phosphorus transported by world rivers to the oceans is associated with dissolved organic matter. However, organic matter as a potential…”
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High DON Bioavailability in Boreal Streams during a Spring Flood by Stepanauskas, Ramunas, Laudon, Hjalmar, Niels O. G. Jorgensen

“…Riverine inputs of nitrogen is an important factor that controls productivity of coastal marine waters. Dissolved organic nitrogen (DON) comprises most of the…”
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Major role of nitrite-oxidizing bacteria in dark ocean carbon fixation by Pachiadaki, Maria G., Sintes, Eva, Bergauer, Kristin, Brown, Julia M., Record, Nicholas R., Swan, Brandon K., Mathyer, Mary Elizabeth, Hallam, Steven J., Lopez-Garcia, Purificacion, Takaki, Yoshihiro, Nunoura, Takuro, Woyke, Tanja, Herndl, Gerhard J., Stepanauskas, Ramunas

“…Carbon fixation by chemoautotrophic microorganisms in the dark ocean has a major impact on global carbon cycling and ecological relationships in the ocean’s…”
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Bioavailability of Wetland-Derived DON to Freshwater and Marine Bacterioplankton by Stepanauskas, Ramunas, Leonardson, Lars, Tranvik, Lars J.

“…Access to bioavailable nitrogen often limits primary production in marine and freshwater ecosystems. Around 70% of nitrogen transported by rivers worldwide…”
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Hidden diversity in honey bee gut symbionts detected by single-cell genomics by Engel, Philipp, Stepanauskas, Ramunas, Moran, Nancy A

“…Microbial communities in animal guts are composed of diverse, specialized bacterial species, but little is known about how gut bacteria diversify to produce…”
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Diversification and niche adaptations of Nitrospina-like bacteria in the polyextreme interfaces of Red Sea brines by Ngugi, David Kamanda, Blom, Jochen, Stepanauskas, Ramunas, Stingl, Ulrich

“…Nitrite-oxidizing bacteria (NOB) of the genus Nitrospina have exclusively been found in marine environments. In the brine–seawater interface layer of Atlantis…”
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Charting the Complexity of the Marine Microbiome through Single-Cell Genomics by Pachiadaki, Maria G., Brown, Julia M., Brown, Joseph, Bezuidt, Oliver, Berube, Paul M., Biller, Steven J., Poulton, Nicole J., Burkart, Michael D., La Clair, James J., Chisholm, Sallie W., Stepanauskas, Ramunas

“…Marine bacteria and archaea play key roles in global biogeochemistry. To improve our understanding of this complex microbiome, we employed single-cell genomics…”
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Phylogenetically and functionally diverse microorganisms reside under the Ross Ice Shelf by Martínez-Pérez, Clara, Greening, Chris, Bay, Sean K., Lappan, Rachael J., Zhao, Zihao, De Corte, Daniele, Hulbe, Christina, Ohneiser, Christian, Stevens, Craig, Thomson, Blair, Stepanauskas, Ramunas, González, José M., Logares, Ramiro, Herndl, Gerhard J., Morales, Sergio E., Baltar, Federico

“…Throughout coastal Antarctica, ice shelves separate oceanic waters from sunlight by hundreds of meters of ice. Historical studies have detected activity of…”
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Insights into the phylogeny and coding potential of microbial dark matter by Rinke, Christian, Schwientek, Patrick, Sczyrba, Alexander, Ivanova, Natalia N., Anderson, Iain J., Cheng, Jan-Fang, Darling, Aaron, Malfatti, Stephanie, Swan, Brandon K., Gies, Esther A., Dodsworth, Jeremy A., Hedlund, Brian P., Tsiamis, George, Sievert, Stefan M., Liu, Wen-Tso, Eisen, Jonathan A., Hallam, Steven J., Kyrpides, Nikos C., Stepanauskas, Ramunas, Rubin, Edward M., Hugenholtz, Philip, Woyke, Tanja

“…Genome sequencing enhances our understanding of the biological world by providing blueprints for the evolutionary and functional diversity that shapes the…”
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Ecology and evolution of viruses infecting uncultivated SUP05 bacteria as revealed by single-cell- and meta-genomics by Roux, Simon, Hawley, Alyse K, Torres Beltran, Monica, Scofield, Melanie, Schwientek, Patrick, Stepanauskas, Ramunas, Woyke, Tanja, Hallam, Steven J, Sullivan, Matthew B

“…Viruses modulate microbial communities and alter ecosystem functions. However, due to cultivation bottlenecks, specific virus-host interaction dynamics remain…”
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Ubiquitous Gammaproteobacteria dominate dark carbon fixation in coastal sediments by Dyksma, Stefan, Bischof, Kerstin, Fuchs, Bernhard M, Hoffmann, Katy, Meier, Dimitri, Meyerdierks, Anke, Pjevac, Petra, Probandt, David, Richter, Michael, Stepanauskas, Ramunas, Mußmann, Marc

“…Marine sediments are the largest carbon sink on earth. Nearly half of dark carbon fixation in the oceans occurs in coastal sediments, but the microorganisms…”
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Emergence of trait variability through the lens of nitrogen assimilation in Prochlorococcus by Berube, Paul M, Rasmussen, Anna, Braakman, Rogier, Stepanauskas, Ramunas, Chisholm, Sallie W

“…Intraspecific trait variability has important consequences for the function and stability of marine ecosystems. Here we examine variation in the ability to use…”
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Predominant archaea in marine sediments degrade detrital proteins by Lloyd, Karen G., Schreiber, Lars, Petersen, Dorthe G., Kjeldsen, Kasper U., Lever, Mark A., Steen, Andrew D., Stepanauskas, Ramunas, Richter, Michael, Kleindienst, Sara, Lenk, Sabine, Schramm, Andreas, Jørgensen, Bo Barker

“…Miscellaneous crenarchaeotal group (MCG) and marine benthic group-D (MBG-D) are among the most numerous archaea in sea-floor sediments; single-cell genomics…”
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Organic matter processing by microbial communities throughout the Atlantic water column as revealed by metaproteomics by Bergauer, Kristin, Fernandez-Guerra, Antonio, Garcia, Juan A. L., Sprenger, Richard R., Stepanauskas, Ramunas, Pachiadaki, Maria G., Jensen, Ole N., Herndl, Gerhard J.

“…The phylogenetic composition of the heterotrophic microbial community is depth stratified in the oceanic water column down to abyssopelagic layers. In the…”
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Phylogenomics suggests oxygen availability as a driving force in Thaumarchaeota evolution by Ren, Minglei, Feng, Xiaoyuan, Huang, Yongjie, Wang, Hui, Hu, Zhong, Clingenpeel, Scott, Swan, Brandon K., Fonseca, Miguel M., Posada, David, Stepanauskas, Ramunas, Hollibaugh, James T., Foster, Peter G., Woyke, Tanja, Luo, Haiwei

“…Ammonia-oxidizing archaea (AOA) of the phylum Thaumarchaeota are widespread in marine and terrestrial habitats, playing a major role in the global nitrogen…”
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SAR202 Genomes from the Dark Ocean Predict Pathways for the Oxidation of Recalcitrant Dissolved Organic Matter by Landry, Zachary, Swan, Brandon K, Herndl, Gerhard J, Stepanauskas, Ramunas, Giovannoni, Stephen J

“…Deep-ocean regions beyond the reach of sunlight contain an estimated 615 Pg of dissolved organic matter (DOM), much of which persists for thousands of years…”
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Diversification of methanogens into hyperalkaline serpentinizing environments through adaptations to minimize oxidant limitation by Fones, Elizabeth M., Colman, Daniel R., Kraus, Emily A., Stepanauskas, Ramunas, Templeton, Alexis S., Spear, John R., Boyd, Eric S.

“…Metagenome assembled genomes (MAGs) and single amplified genomes (SAGs) affiliated with two distinct Methanobacterium lineages were recovered from subsurface…”
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Decontamination of MDA reagents for single cell whole genome amplification by Woyke, Tanja, Sczyrba, Alexander, Lee, Janey, Rinke, Christian, Tighe, Damon, Clingenpeel, Scott, Malmstrom, Rex, Stepanauskas, Ramunas, Cheng, Jan-Fang

“…Single cell genomics is a powerful and increasingly popular tool for studying the genetic make-up of uncultured microbes. A key challenge for successful single…”
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Improved genome recovery and integrated cell-size analyses of individual uncultured microbial cells and viral particles by Stepanauskas, Ramunas, Fergusson, Elizabeth A., Brown, Joseph, Poulton, Nicole J., Tupper, Ben, Labonté, Jessica M., Becraft, Eric D., Brown, Julia M., Pachiadaki, Maria G., Povilaitis, Tadas, Thompson, Brian P., Mascena, Corianna J., Bellows, Wendy K., Lubys, Arvydas

“…Microbial single-cell genomics can be used to provide insights into the metabolic potential, interactions, and evolution of uncultured microorganisms. Here we…”
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