Search Results - "Stapleton, James"

Development of an in vitro compartmentalization screen for high-throughput directed evolution of [FeFe] hydrogenases by Stapleton, James A, Swartz, James R

“…[FeFe] hydrogenase enzymes catalyze the formation and dissociation of molecular hydrogen with the help of a complex prosthetic group composed of common…”
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Changes of Fusarium oxysporum f.sp. lactucae levels and soil microbial community during soil biosolarization using chitin as soil amendment by Randall, Tara E, Fernandez-Bayo, Jesus D, Harrold, Duff R, Achmon, Yigal, Hestmark, Kelley V, Gordon, Thomas R, Stapleton, James J, Simmons, Christopher W, VanderGheynst, Jean S

“…Regulatory pressure along with environmental and human health concerns drive the development of soil fumigation alternatives such as soil biosolarization…”
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High-resolution sequence-function mapping of full-length proteins by Kowalsky, Caitlin A, Klesmith, Justin R, Stapleton, James A, Kelly, Vince, Reichkitzer, Nolan, Whitehead, Timothy A

“…Comprehensive sequence-function mapping involves detailing the fitness contribution of every possible single mutation to a gene by comparing the abundance of…”
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A cell-free microtiter plate screen for improved [FeFe] hydrogenases by Stapleton, James A, Swartz, James R

“…[FeFe] hydrogenase enzymes catalyze the production and dissociation of H(2), a potential renewable fuel. Attempts to exploit these catalysts in engineered…”
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Computational redesign of the lipid-facing surface of the outer membrane protein OmpA by Stapleton, James A., Whitehead, Timothy A., Nanda, Vikas

“…Advances in computational design methods have made possible extensive engineering of soluble proteins, but designed β-barrel membrane proteins await…”
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Haplotype-Phased Synthetic Long Reads from Short-Read Sequencing by Stapleton, James A, Kim, Jeongwoon, Hamilton, John P, Wu, Ming, Irber, Luiz C, Maddamsetti, Rohan, Briney, Bryan, Newton, Linsey, Burton, Dennis R, Brown, C Titus, Chan, Christina, Buell, C Robin, Whitehead, Timothy A

“…Next-generation DNA sequencing has revolutionized the study of biology. However, the short read lengths of the dominant instruments complicate assembly of…”
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Assessment of tomato and wine processing solid wastes as soil amendments for biosolarization by Achmon, Yigal, Harrold, Duff R., Claypool, Joshua T., Stapleton, James J., VanderGheynst, Jean S., Simmons, Christopher W.

“…[Display omitted] •The biosolarization potential of tomato and grape processing wastes were assessed.•Simulated biosolarization gauged pest inactivation…”
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Almond processing residues as a source of organic acid biopesticides during biosolarization by Fernandez-Bayo, Jesus D., Shea, Emily A., Parr, Amy E., Achmon, Yigal, Stapleton, James J., VanderGheynst, Jean S., Hodson, Amanda K., Simmons, Christopher W.

“…•Feasibility of almond by-products was demonstrated for use in biosolarization.•Treated soils experienced pH depression and organic acid accumulation.•Residue…”
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Assessment of Two Solid Anaerobic Digestate Soil Amendments for Effects on Soil Quality and Biosolarization Efficacy by Fernández-Bayo, Jesús D, Achmon, Yigal, Harrold, Duff R, McCurry, Dlinka G, Hernandez, Katie, Dahlquist-Willard, Ruth M, Stapleton, James J, VanderGheynst, Jean S, Simmons, Christopher W

“…Anaerobic digestion is an organic waste bioconversion process that produces biofuel and digestates. Digestates have potential to be applied as soil amendment…”
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Tyrosine, cysteine, and S-adenosyl methionine stimulate in vitro [FeFe] hydrogenase activation by Kuchenreuther, Jon M, Stapleton, James A, Swartz, James R

“…[FeFe] hydrogenases are metalloenzymes involved in the anaerobic metabolism of H(2). These proteins are distinguished by an active site cofactor known as the…”
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Quantitative and simultaneous translational control of distinct mammalian mRNAs by Endo, Kei, Stapleton, James A, Hayashi, Karin, Saito, Hirohide, Inoue, Tan

“…The introduction of multiple genes into cells is increasingly required for understanding and engineering biological systems. Small-molecule-responsive…”
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Weed seed inactivation in soil mesocosms via biosolarization with mature compost and tomato processing waste amendments by Achmon, Yigal, Fernández‐Bayo, Jesús D, Hernandez, Katie, McCurry, Dlinka G, Harrold, Duff R, Su, Joey, Dahlquist‐Willard, Ruth M, Stapleton, James J, VanderGheynst, Jean S, Simmons, Christopher W

“…BACKGROUND Biosolarization is a fumigation alternative that combines passive solar heating with amendment‐driven soil microbial activity to temporarily create…”
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Characterization of bacterial communities in solarized soil amended with lignocellulosic organic matter by Simmons, Christopher W., Claypool, Joshua T., Marshall, Megan N., Jabusch, Lauren K., Reddy, Amitha P., Simmons, Blake A., Singer, Steven W., Stapleton, James J., VanderGheynst, Jean S.

“…•Microbial community structures in solarized soils are studied.•Soils were amended with mature compost and organic matter prior to solarization.•Bacterial…”
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The effect of circular soil biosolarization treatment on the physiology, metabolomics, and microbiome of tomato plants under certain abiotic stresses by Haber, Zechariah, Wilhelmi, María Del Mar Rubio, Fernández-Bayo, Jesus D, Harrold, Duff R, Stapleton, James J, Toubiana, David, VanderGheynst, Jean S, Blumwald, Eduardo, Simmons, Christopher W, Sade, Nir, Achmon, Yigal

“…Soil biosolarization (SBS) is an alternative technique for soil pest control to standard techniques such as soil fumigation and soil solarization (SS). By…”
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Effects of Short-Term Biosolarization Using Mature Compost and Industrial Tomato Waste Amendments on the Generation and Persistence of Biocidal Soil Conditions and Subsequent Tomato Growth by Achmon, Yigal, Sade, Nir, Wilhelmi, María del Mar Rubio, Fernández-Bayo, Jesus D, Harrold, Duff R, Stapleton, James J, VanderGheynst, Jean S, Blumwald, Eduardo, Simmons, Christopher W

“…Conventional solarization and biosolarization with mature compost and tomato processing residue amendments were compared with respect to generation of…”
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Managing compost stability and amendment to soil to enhance soil heating during soil solarization by Simmons, Christopher W., Guo, Hongyun, Claypool, Joshua T., Marshall, Megan N., Perano, Kristen M., Stapleton, James J., VanderGheynst, Jean S.

“…► We examine heat generation during solarization of soil amended with organic matter. ► Biological activity and phytotoxicity in solarized amended soil were…”
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Fine Epitope Mapping of Two Antibodies Neutralizing the Bordetella Adenylate Cyclase Toxin by Wang, Xianzhe, Stapleton, James A, Klesmith, Justin R, Hewlett, Erik L, Whitehead, Timothy A, Maynard, Jennifer A

“…Adenylate cyclase toxin (ACT) is an important Bordetella pertussis virulence factor that is not included in current acellular pertussis vaccines. We previously…”
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Effect of management of organic wastes on inactivation of Brassica nigra and Fusarium oxysporum f.sp. lactucae using soil biosolarization by Fernández‐Bayo, Jesus Dionisio, Randall, Tara E, Harrold, Duff R, Achmon, Yigal, Hestmark, Kelley V, Su, Joey, Dahlquist‐Willard, Ruth M, Gordon, Thomas R, Stapleton, James J, VanderGheynst, Jean S, Simmons, Christopher W

“…BACKGROUND Soil biosolarization is a promising alternative to conventional fumigation. Volatile fatty acids (VFAs) produced in the soil through fermentation of…”
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Plasmid-based one-pot saturation mutagenesis by Wrenbeck, Emily E, Klesmith, Justin R, Stapleton, James A, Adeniran, Adebola, Tyo, Keith E J, Whitehead, Timothy A

“…Nicking mutagenesis is a streamlined protocol for plasmid-based single-pot comprehensive saturation mutagenesis. Deep mutational scanning is a foundational…”
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A life cycle assessment of biosolarization as a valorization pathway for tomato pomace utilization in California by Oldfield, Thomas L., Achmon, Yigal, Perano, Kristen M., Dahlquist-Willard, Ruth M., VanderGheynst, Jean S., Stapleton, James J., Simmons, Christopher W., Holden, Nicholas M.

“…The California tomato processing industry produced circa 388,856 t of tomato pomace in 2014. While currently used for animal feed, tomato pomace could be…”
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