Search Results - "Staines, Daniel M."

Ensembl Genomes 2020—enabling non-vertebrate genomic research by Howe, Kevin L, Contreras-Moreira, Bruno, De Silva, Nishadi, Maslen, Gareth, Akanni, Wasiu, Allen, James, Alvarez-Jarreta, Jorge, Barba, Matthieu, Bolser, Dan M, Cambell, Lahcen, Carbajo, Manuel, Chakiachvili, Marc, Christensen, Mikkel, Cummins, Carla, Cuzick, Alayne, Davis, Paul, Fexova, Silvie, Gall, Astrid, George, Nancy, Gil, Laurent, Gupta, Parul, Hammond-Kosack, Kim E, Haskell, Erin, Hunt, Sarah E, Jaiswal, Pankaj, Janacek, Sophie H, Kersey, Paul J, Langridge, Nick, Maheswari, Uma, Maurel, Thomas, McDowall, Mark D, Moore, Ben, Muffato, Matthieu, Naamati, Guy, Naithani, Sushma, Olson, Andrew, Papatheodorou, Irene, Patricio, Mateus, Paulini, Michael, Pedro, Helder, Perry, Emily, Preece, Justin, Rosello, Marc, Russell, Matthew, Sitnik, Vasily, Staines, Daniel M, Stein, Joshua, Tello-Ruiz, Marcela K, Trevanion, Stephen J, Urban, Martin, Wei, Sharon, Ware, Doreen, Williams, Gary, Yates, Andrew D, Flicek, Paul

“…Abstract Ensembl Genomes (http://www.ensemblgenomes.org) is an integrating resource for genome-scale data from non-vertebrate species, complementing the…”
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Ensembl Plants: Integrating Tools for Visualizing, Mining, and Analyzing Plant Genomics Data by Bolser, Dan, Staines, Daniel M, Pritchard, Emily, Kersey, Paul

“…Ensembl Plants ( http://plants.ensembl.org ) is an integrative resource presenting genome-scale information for a growing number of sequenced plant species…”
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PomBase 2015: updates to the fission yeast database by McDowall, Mark D., Harris, Midori A., Lock, Antonia, Rutherford, Kim, Staines, Daniel M., Bähler, Jürg, Kersey, Paul J., Oliver, Stephen G., Wood, Valerie

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Ensembl Plants: Integrating Tools for Visualizing, Mining, and Analyzing Plant Genomic Data by Bolser, Dan M, Staines, Daniel M, Perry, Emily, Kersey, Paul J

“…Ensembl Plants ( http://plants.ensembl.org ) is an integrative resource presenting genome-scale information for 39 sequenced plant species. Available data…”
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Ensembl Genomes: an integrative resource for genome-scale data from non-vertebrate species by Kersey, Paul J., Staines, Daniel M., Lawson, Daniel, Kulesha, Eugene, Derwent, Paul, Humphrey, Jay C., Hughes, Daniel S. T., Keenan, Stephan, Kerhornou, Arnaud, Koscielny, Gautier, Langridge, Nicholas, McDowall, Mark D., Megy, Karine, Maheswari, Uma, Nuhn, Michael, Paulini, Michael, Pedro, Helder, Toneva, Iliana, Wilson, Derek, Yates, Andrew, Birney, Ewan

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Ensembl 2019 by Cunningham, Fiona, Achuthan, Premanand, Akanni, Wasiu, Allen, James, Amode, M Ridwan, Armean, Irina M, Bennett, Ruth, Bhai, Jyothish, Billis, Konstantinos, Boddu, Sanjay, Cummins, Carla, Davidson, Claire, Dodiya, Kamalkumar Jayantilal, Gall, Astrid, Girón, Carlos García, Gil, Laurent, Grego, Tiago, Haggerty, Leanne, Haskell, Erin, Hourlier, Thibaut, Izuogu, Osagie G, Janacek, Sophie H, Juettemann, Thomas, Kay, Mike, Laird, Matthew R, Lavidas, Ilias, Liu, Zhicheng, Loveland, Jane E, Marugán, José C, Maurel, Thomas, McMahon, Aoife C, Moore, Benjamin, Morales, Joannella, Mudge, Jonathan M, Nuhn, Michael, Ogeh, Denye, Parker, Anne, Parton, Andrew, Patricio, Mateus, Abdul Salam, Ahamed Imran, Schmitt, Bianca M, Schuilenburg, Helen, Sheppard, Dan, Sparrow, Helen, Stapleton, Eloise, Szuba, Marek, Taylor, Kieron, Threadgold, Glen, Thormann, Anja, Vullo, Alessandro, Walts, Brandon, Winterbottom, Andrea, Zadissa, Amonida, Chakiachvili, Marc, Frankish, Adam, Hunt, Sarah E, Kostadima, Myrto, Langridge, Nick, Martin, Fergal J, Muffato, Matthieu, Perry, Emily, Ruffier, Magali, Staines, Daniel M, Trevanion, Stephen J, Aken, Bronwen L, Yates, Andrew D, Zerbino, Daniel R, Flicek, Paul

“…Abstract The Ensembl project (https://www.ensembl.org) makes key genomic data sets available to the entire scientific community without restrictions. Ensembl…”
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Ensembl Genomes 2016: more genomes, more complexity by Kersey, Paul Julian, Allen, James E, Armean, Irina, Boddu, Sanjay, Bolt, Bruce J, Carvalho-Silva, Denise, Christensen, Mikkel, Davis, Paul, Falin, Lee J, Grabmueller, Christoph, Humphrey, Jay, Kerhornou, Arnaud, Khobova, Julia, Aranganathan, Naveen K, Langridge, Nicholas, Lowy, Ernesto, McDowall, Mark D, Maheswari, Uma, Nuhn, Michael, Ong, Chuang Kee, Overduin, Bert, Paulini, Michael, Pedro, Helder, Perry, Emily, Spudich, Giulietta, Tapanari, Electra, Walts, Brandon, Williams, Gareth, Tello-Ruiz, Marcela, Stein, Joshua, Wei, Sharon, Ware, Doreen, Bolser, Daniel M, Howe, Kevin L, Kulesha, Eugene, Lawson, Daniel, Maslen, Gareth, Staines, Daniel M

“…Ensembl Genomes (http://www.ensemblgenomes.org) is an integrating resource for genome-scale data from non-vertebrate species, complementing the resources for…”
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Ensembl 2017 by Aken, Bronwen L, Achuthan, Premanand, Akanni, Wasiu, Amode, M Ridwan, Bernsdorff, Friederike, Bhai, Jyothish, Billis, Konstantinos, Carvalho-Silva, Denise, Cummins, Carla, Clapham, Peter, Gil, Laurent, Girón, Carlos García, Gordon, Leo, Hourlier, Thibaut, Hunt, Sarah E, Janacek, Sophie H, Juettemann, Thomas, Keenan, Stephen, Laird, Matthew R, Lavidas, Ilias, Maurel, Thomas, McLaren, William, Moore, Benjamin, Murphy, Daniel N, Nag, Rishi, Newman, Victoria, Nuhn, Michael, Ong, Chuang Kee, Parker, Anne, Patricio, Mateus, Riat, Harpreet Singh, Sheppard, Daniel, Sparrow, Helen, Taylor, Kieron, Thormann, Anja, Vullo, Alessandro, Walts, Brandon, Wilder, Steven P, Zadissa, Amonida, Kostadima, Myrto, Martin, Fergal J, Muffato, Matthieu, Perry, Emily, Ruffier, Magali, Staines, Daniel M, Trevanion, Stephen J, Cunningham, Fiona, Yates, Andrew, Zerbino, Daniel R, Flicek, Paul

“…Ensembl (www.ensembl.org) is a database and genome browser for enabling research on vertebrate genomes. We import, analyse, curate and integrate a diverse…”
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RSAT 2015: Regulatory Sequence Analysis Tools by Medina-Rivera, Alejandra, Defrance, Matthieu, Sand, Olivier, Herrmann, Carl, Castro-Mondragon, Jaime A, Delerce, Jeremy, Jaeger, Sébastien, Blanchet, Christophe, Vincens, Pierre, Caron, Christophe, Staines, Daniel M, Contreras-Moreira, Bruno, Artufel, Marie, Charbonnier-Khamvongsa, Lucie, Hernandez, Céline, Thieffry, Denis, Thomas-Chollier, Morgane, van Helden, Jacques

“…RSAT (Regulatory Sequence Analysis Tools) is a modular software suite for the analysis of cis-regulatory elements in genome sequences. Its main applications…”
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The BioMart community portal: an innovative alternative to large, centralized data repositories by Smedley, Damian, Haider, Syed, Durinck, Steffen, Pandini, Luca, Provero, Paolo, Allen, James, Arnaiz, Olivier, Awedh, Mohammad Hamza, Baldock, Richard, Barbiera, Giulia, Bardou, Philippe, Beck, Tim, Blake, Andrew, Bonierbale, Merideth, Brookes, Anthony J, Bucci, Gabriele, Buetti, Iwan, Burge, Sarah, Cabau, Cédric, Carlson, Joseph W, Chelala, Claude, Chrysostomou, Charalambos, Cittaro, Davide, Collin, Olivier, Cordova, Raul, Cutts, Rosalind J, Dassi, Erik, Di Genova, Alex, Djari, Anis, Esposito, Anthony, Estrella, Heather, Eyras, Eduardo, Fernandez-Banet, Julio, Forbes, Simon, Free, Robert C, Fujisawa, Takatomo, Gadaleta, Emanuela, Garcia-Manteiga, Jose M, Goodstein, David, Gray, Kristian, Guerra-Assunção, José Afonso, Haggarty, Bernard, Han, Dong-Jin, Han, Byung Woo, Harris, Todd, Harshbarger, Jayson, Hastings, Robert K, Hayes, Richard D, Hoede, Claire, Hu, Shen, Hu, Zhi-Liang, Hutchins, Lucie, Kan, Zhengyan, Kawaji, Hideya, Keliet, Aminah, Kerhornou, Arnaud, Kim, Sunghoon, Kinsella, Rhoda, Klopp, Christophe, Kong, Lei, Lawson, Daniel, Lazarevic, Dejan, Lee, Ji-Hyun, Letellier, Thomas, Li, Chuan-Yun, Lio, Pietro, Liu, Chu-Jun, Luo, Jie, Maass, Alejandro, Mariette, Jerome, Maurel, Thomas, Merella, Stefania, Mohamed, Azza Mostafa, Moreews, Francois, Nabihoudine, Ibounyamine, Ndegwa, Nelson, Noirot, Céline, Perez-Llamas, Cristian, Primig, Michael, Quattrone, Alessandro, Quesneville, Hadi, Rambaldi, Davide, Reecy, James, Riba, Michela, Rosanoff, Steven, Saddiq, Amna Ali, Salas, Elisa, Sallou, Olivier, Shepherd, Rebecca, Simon, Reinhard, Sperling, Linda, Spooner, William, Staines, Daniel M, Steinbach, Delphine, Stone, Kevin, Stupka, Elia, Teague, Jon W, Dayem Ullah, Abu Z, Wang, Jun, Ware, Doreen

“…The BioMart Community Portal (www.biomart.org) is a community-driven effort to provide a unified interface to biomedical databases that are distributed…”
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PomBase: a comprehensive online resource for fission yeast by Wood, Valerie, Harris, Midori A., McDowall, Mark D., Rutherford, Kim, Vaughan, Brendan W., Staines, Daniel M., Aslett, Martin, Lock, Antonia, Bähler, Jürg, Kersey, Paul J., Oliver, Stephen G.

“…PomBase (www.pombase.org) is a new model organism database established to provide access to comprehensive, accurate, and up-to-date molecular data and…”
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PomBase 2015: updates to the fission yeast database by McDowall, Mark D, Harris, Midori A, Lock, Antonia, Rutherford, Kim, Staines, Daniel M, Bähler, Jürg, Kersey, Paul J, Oliver, Stephen G, Wood, Valerie

“…PomBase (http://www.pombase.org) is the model organism database for the fission yeast Schizosaccharomyces pombe. PomBase provides a central hub for the fission…”
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Ensembl Genomes: an integrative resource for genome-scale data from non-vertebrate species by Kersey, Paul J., Staines, Daniel M., Lawson, Daniel, Kulesha, Eugene, Derwent, Paul, Humphrey, Jay C., Hughes, Daniel S. T., Keenan, Stephan, Kerhornou, Arnaud, Koscielny, Gautier, Langridge, Nicholas, McDowall, Mark D., Megy, Karine, Maheswari, Uma, Nuhn, Michael, Paulini, Michael, Pedro, Helder, Toneva, Iliana, Wilson, Derek, Yates, Andrew, Birney, Ewan

“…Ensembl Genomes (http://www.ensemblgenomes.org) is an integrative resource for genome-scale data from non-vertebrate species. The project exploits and extends…”
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PhytoPath: an integrative resource for plant pathogen genomics by Pedro, Helder, Maheswari, Uma, Urban, Martin, Irvine, Alistair George, Cuzick, Alayne, McDowall, Mark D, Staines, Daniel M, Kulesha, Eugene, Hammond-Kosack, Kim Elizabeth, Kersey, Paul Julian

“…PhytoPath (www.phytopathdb.org) is a resource for genomic and phenotypic data from plant pathogen species, that integrates phenotypic data for genes from…”
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Ensembl Genomes 2016: more genomes, more complexity by Kersey, Paul Julian, Allen, James E., Armean, Irina, Boddu, Sanjay, Bolt, Bruce J., Carvalho-Silva, Denise, Christensen, Mikkel, Davis, Paul, Falin, Lee J., Grabmueller, Christoph, Humphrey, Jay, Kerhornou, Arnaud, Khobova, Julia, Aranganathan, Naveen K., Langridge, Nicholas, Lowy, Ernesto, McDowall, Mark D., Maheswari, Uma, Nuhn, Michael, Ong, Chuang Kee, Overduin, Bert, Paulini, Michael, Pedro, Helder, Perry, Emily, Spudich, Giulietta, Tapanari, Electra, Walts, Brandon, Williams, Gareth, Tello–Ruiz, Marcela, Stein, Joshua, Wei, Sharon, Ware, Doreen, Bolser, Daniel M., Howe, Kevin L., Kulesha, Eugene, Lawson, Daniel, Maslen, Gareth, Staines, Daniel M.

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A sequence with homology to human HPFH-linked enhancer elements and to a family of G-protein linked membrane receptor genes is located downstream of the chicken β-globin locus by Staines, Daniel M., Thomas, Jean O.

“…We report 5805 bp of novel sequence (GenBank/EMBL Accession No. AJ012570) from a region starting approx. 11.5 kb downstream of the chicken β-globin locus (map…”
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